PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010930544.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ARF
Protein Properties Length: 682aa    MW: 75800.5 Da    PI: 6.5125
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010930544.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.36e-23128228198
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++ +++a+e+       ++++   ++l+ +d++g++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F   + +
  XP_010930544.1 128 FCKTLTASDTSTHGGFSVLRRHADEClppldmsQHPP--WQELVAKDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKRLVAGDAFIFL--RGE 218
                     99*****************************654444..458************************************************..449 PP

                     EE..EEEEE- CS
              B3  89 efelvvkvfr 98 
                     ++el+v+v+r
  XP_010930544.1 219 NGELRVGVRR 228
                     999*****97 PP
2Auxin_resp115.45.2e-38254336183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha+st++ F+v+Y+Pr+s+seF+++v+k+++a ++k+svGmRfkm+fe+++++err+sGt++gv d+ p+rW +S+WrsLk
  XP_010930544.1 254 ASHAVSTGTLFSVFYKPRTSRSEFIISVNKYLEAKNHKLSVGMRFKMRFEGDEAPERRFSGTIIGVGDTTPSRWADSEWRSLK 336
                     789******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.29E-42119257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-40126243IPR015300DNA-binding pseudobarrel domain
CDDcd100171.49E-21126228No hitNo description
PfamPF023627.4E-21128228IPR003340B3 DNA binding domain
PROSITE profilePS5086311.307128230IPR003340B3 DNA binding domain
SMARTSM010195.6E-22128230IPR003340B3 DNA binding domain
PfamPF065078.5E-36254336IPR010525Auxin response factor
PfamPF023091.0E-13493643IPR033389AUX/IAA domain
PROSITE profilePS5174527.957553646IPR000270PB1 domain
SuperFamilySSF542773.83E-12556631No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    Send to blast
MALLPPHSSS EGLHGSAPSG DVLYRELWHA CAGPLVTVPR DGERVYYFPQ GHMEQLEAST  60
NQGLDQHMPL FNLPSKILCR VVHVQLRAEP DTDEVYAQIT LLPEPDQSEV KSPDPPLPEP  120
ETCIVHSFCK TLTASDTSTH GGFSVLRRHA DECLPPLDMS QHPPWQELVA KDLHGNEWHF  180
RHIFRGQPRR HLLTTGWSVF VSSKRLVAGD AFIFLRGENG ELRVGVRRLM RQLNNMPSSV  240
ISSHSMHLGV LATASHAVST GTLFSVFYKP RTSRSEFIIS VNKYLEAKNH KLSVGMRFKM  300
RFEGDEAPER RFSGTIIGVG DTTPSRWADS EWRSLKVQWD EPSSIPRPDR VSPWELEPLV  360
AAAPPTSQPA QRNKRARPPP SIMPDISPVL GLWKSPVEST QTLSFSGLQR GRELYPSSSP  420
TSLFSLTSNP ASIGLNANNG PSAVMNRPAY WPVGADAQAR INREPCEKKQ DTGTGYRLFG  480
IELIESHAVE EASPAANVAT AVGEVQPVKS LGEDSDRQSQ PSNINRSDAP AVSSEPEKSC  540
LRSPQETQSR QLRSCTKVHM QGMAVGRAVD LTRVDGYDEL LQKLEEMFHI KGELTGAVKK  600
WQVVYTDDED DMMLVGDDPW HEFCSMVRKI YIYTCEEAKR LSPKVKLPVV SEAIKPGLKK  660
SSSDADSTRN RPEDQDAADE EC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.02135917355Auxin response factor 1
4ldw_A0.02135917355Auxin response factor 1
4ldw_B0.02135917355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00097PBMTransfer from AT1G59750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010930543.10.0auxin response factor 7
RefseqXP_010930544.10.0auxin response factor 7
RefseqXP_010930545.10.0auxin response factor 7
RefseqXP_019708395.10.0auxin response factor 7
RefseqXP_019708396.10.0auxin response factor 7
SwissprotQ6YVY00.0ARFG_ORYSJ; Auxin response factor 7
TrEMBLA0A3Q0HY700.0A0A3Q0HY70_PHODC; Auxin response factor
STRINGXP_008786460.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.40.0auxin response factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]