PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010930543.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | ARF | ||||||||
Protein Properties | Length: 682aa MW: 75800.5 Da PI: 6.5125 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.3 | 6e-23 | 128 | 228 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++ +++a+e+ ++++ ++l+ +d++g++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F + + XP_010930543.1 128 FCKTLTASDTSTHGGFSVLRRHADEClppldmsQHPP--WQELVAKDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKRLVAGDAFIFL--RGE 218 99*****************************654444..458************************************************..449 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 ++el+v+v+r XP_010930543.1 219 NGELRVGVRR 228 999*****97 PP | |||||||
2 | Auxin_resp | 115.4 | 5.2e-38 | 254 | 336 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+st++ F+v+Y+Pr+s+seF+++v+k+++a ++k+svGmRfkm+fe+++++err+sGt++gv d+ p+rW +S+WrsLk XP_010930543.1 254 ASHAVSTGTLFSVFYKPRTSRSEFIISVNKYLEAKNHKLSVGMRFKMRFEGDEAPERRFSGTIIGVGDTTPSRWADSEWRSLK 336 789******************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.29E-42 | 119 | 257 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.5E-40 | 126 | 243 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.49E-21 | 126 | 228 | No hit | No description |
Pfam | PF02362 | 7.4E-21 | 128 | 228 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.307 | 128 | 230 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.6E-22 | 128 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 8.5E-36 | 254 | 336 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.0E-13 | 493 | 643 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 27.957 | 553 | 646 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 3.83E-12 | 556 | 631 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 682 aa Download sequence Send to blast |
MALLPPHSSS EGLHGSAPSG DVLYRELWHA CAGPLVTVPR DGERVYYFPQ GHMEQLEAST 60 NQGLDQHMPL FNLPSKILCR VVHVQLRAEP DTDEVYAQIT LLPEPDQSEV KSPDPPLPEP 120 ETCIVHSFCK TLTASDTSTH GGFSVLRRHA DECLPPLDMS QHPPWQELVA KDLHGNEWHF 180 RHIFRGQPRR HLLTTGWSVF VSSKRLVAGD AFIFLRGENG ELRVGVRRLM RQLNNMPSSV 240 ISSHSMHLGV LATASHAVST GTLFSVFYKP RTSRSEFIIS VNKYLEAKNH KLSVGMRFKM 300 RFEGDEAPER RFSGTIIGVG DTTPSRWADS EWRSLKVQWD EPSSIPRPDR VSPWELEPLV 360 AAAPPTSQPA QRNKRARPPP SIMPDISPVL GLWKSPVEST QTLSFSGLQR GRELYPSSSP 420 TSLFSLTSNP ASIGLNANNG PSAVMNRPAY WPVGADAQAR INREPCEKKQ DTGTGYRLFG 480 IELIESHAVE EASPAANVAT AVGEVQPVKS LGEDSDRQSQ PSNINRSDAP AVSSEPEKSC 540 LRSPQETQSR QLRSCTKVHM QGMAVGRAVD LTRVDGYDEL LQKLEEMFHI KGELTGAVKK 600 WQVVYTDDED DMMLVGDDPW HEFCSMVRKI YIYTCEEAKR LSPKVKLPVV SEAIKPGLKK 660 SSSDADSTRN RPEDQDAADE EC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 0.0 | 21 | 359 | 17 | 355 | Auxin response factor 1 |
4ldw_A | 0.0 | 21 | 359 | 17 | 355 | Auxin response factor 1 |
4ldw_B | 0.0 | 21 | 359 | 17 | 355 | Auxin response factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00097 | PBM | Transfer from AT1G59750 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010930543.1 | 0.0 | auxin response factor 7 | ||||
Refseq | XP_010930544.1 | 0.0 | auxin response factor 7 | ||||
Refseq | XP_010930545.1 | 0.0 | auxin response factor 7 | ||||
Refseq | XP_019708395.1 | 0.0 | auxin response factor 7 | ||||
Refseq | XP_019708396.1 | 0.0 | auxin response factor 7 | ||||
Swissprot | Q6YVY0 | 0.0 | ARFG_ORYSJ; Auxin response factor 7 | ||||
TrEMBL | A0A3Q0HY70 | 0.0 | A0A3Q0HY70_PHODC; Auxin response factor | ||||
STRING | XP_008786460.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1082 | 36 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G59750.4 | 0.0 | auxin response factor 1 |
Publications ? help Back to Top | |||
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