PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010930465.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family LBD
Protein Properties Length: 171aa    MW: 18848.3 Da    PI: 9.4767
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010930465.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260109.42.6e-34221221101
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +Ca C+ l++ C +dC++a +fpa++p++f++v +++Ga+nv ++l++lp+++r++a++s++y A  r+rdPv+Ga+gvi  lq+ql++l+ae a
  XP_010930465.1  22 PCALCRQLEQICRRDCPFADHFPANEPRRFRYVSRVYGAHNVARMLQELPRDQRRMAANSMIYDAALRIRDPVRGAAGVIAGLQRQLMNLRAENA 116
                     7********************************************************************************************** PP

          DUF260  96 llkeel 101
                     +l++++
  XP_010930465.1 117 SLRNQI 122
                     999885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.35521122IPR004883Lateral organ boundaries, LOB
PfamPF031953.7E-3222119IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MSCITTDSSS RNSSPRRVHR APCALCRQLE QICRRDCPFA DHFPANEPRR FRYVSRVYGA  60
HNVARMLQEL PRDQRRMAAN SMIYDAALRI RDPVRGAAGV IAGLQRQLMN LRAENASLRN  120
QIPRLPAPPE APAEGEAPQQ EEGSGPVPGG AHPGEPSSPQ PNEPPRVALS Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A9e-242112410113LOB family transfactor Ramosa2.1
5ly0_B9e-242112410113LOB family transfactor Ramosa2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008780524.14e-61LOB domain-containing protein 6-like
TrEMBLA0A2H3X9T11e-59A0A2H3X9T1_PHODC; LOB domain-containing protein 6-like
STRINGXP_008780524.12e-60(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.15e-29LOB domain-containing protein 4