PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010930464.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | LBD | ||||||||
Protein Properties | Length: 220aa MW: 23487.6 Da PI: 9.07 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 121.1 | 6.3e-38 | 28 | 127 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaC+ rr+C++dCv+ap+fp +q++kf nvh+++G+snv kll++l++++r +a++sl+yeAe+r+r+Pv G+vg+i+ l+++l+ l+ +l+ XP_010930464.1 28 PCAACRQSRRRCQPDCVFAPVFPPNQSQKFMNVHRVYGMSNVGKLLAELQPHQRAAAAESLAYEAEMRLRNPVLGCVGIITLLRRHLQGLQLQLE 122 7*********************************************************************************************9 PP DUF260 96 llkee 100 ++k+e XP_010930464.1 123 AAKAE 127 99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.16 | 27 | 128 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.5E-37 | 28 | 125 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MSIHNVQGSP VSSVTSTDSP PQQAARPPCA ACRQSRRRCQ PDCVFAPVFP PNQSQKFMNV 60 HRVYGMSNVG KLLAELQPHQ RAAAAESLAY EAEMRLRNPV LGCVGIITLL RRHLQGLQLQ 120 LEAAKAELSQ YQHMSNGGLR HGVVGGGGGG GGMQGVMNDE AGEHWEQKRM VMGHDDQAVM 180 ASTQQGAVMN ASAMRNNQSN GQIAGPNGAR VDGPNRLLGS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-41 | 28 | 139 | 11 | 122 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-41 | 28 | 139 | 11 | 122 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010930464.1 | 1e-161 | LOB domain-containing protein 25-like | ||||
TrEMBL | A0A443NSI2 | 3e-47 | A0A443NSI2_9MAGN; LOB domain-containing protein 6-like protein | ||||
STRING | XP_008802098.1 | 3e-57 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP19681 | 7 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65620.4 | 1e-22 | LBD family protein |