PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010930410.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MIKC_MADS
Protein Properties Length: 235aa    MW: 26951.3 Da    PI: 8.5779
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010930410.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.88.9e-31959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien++nrqvtf+kRrng+lKKA+ELSvLCdae+a+iifs +g+lyeys+
  XP_010930410.1  9 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEIALIIFSGRGRLYEYSN 59
                    79***********************************************95 PP

2K-box111.49.2e-37821748100
           K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                       + + ++++qqe+akL+ +i++Lq+ +Rhl+G+ L+sLs+keL+qLe++Le+++++iRskK+ell+++ie++q++e elq++n++Lr+k++e
  XP_010930410.1  82 IIDVNSQQYYQQESAKLRHQIQTLQNANRHLMGDALSSLSVKELKQLENRLERGITRIRSKKHELLFSEIEYMQRREAELQNDNMCLRAKIAE 174
                     3677889***********************************************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.683161IPR002100Transcription factor, MADS-box
SMARTSM004321.7E-41160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-32273IPR002100Transcription factor, MADS-box
CDDcd002651.71E-45278No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-32323IPR002100Transcription factor, MADS-box
PfamPF003196.6E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-323859IPR002100Transcription factor, MADS-box
PfamPF014861.2E-2885172IPR002487Transcription factor, K-box
PROSITE profilePS5129715.5888178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD AEIALIIFSG RGRLYEYSNN  60
SIKSTIERYK NACADSSNSG AIIDVNSQQY YQQESAKLRH QIQTLQNANR HLMGDALSSL  120
SVKELKQLEN RLERGITRIR SKKHELLFSE IEYMQRREAE LQNDNMCLRA KIAENEQAAL  180
QVSIAQEGPQ FDALPAFDSR NYYHVNLLEA ATHYSHQQDQ TALHLGYEAR SDHAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-20169169Myocyte-specific enhancer factor 2B
1tqe_Q1e-20169169Myocyte-specific enhancer factor 2B
1tqe_R1e-20169169Myocyte-specific enhancer factor 2B
1tqe_S1e-20169169Myocyte-specific enhancer factor 2B
5f28_A1e-20169169MEF2C
5f28_B1e-20169169MEF2C
5f28_C1e-20169169MEF2C
5f28_D1e-20169169MEF2C
6byy_A2e-20169169MEF2 CHIMERA
6byy_B2e-20169169MEF2 CHIMERA
6byy_C2e-20169169MEF2 CHIMERA
6byy_D2e-20169169MEF2 CHIMERA
6c9l_A1e-20169169Myocyte-specific enhancer factor 2B
6c9l_B1e-20169169Myocyte-specific enhancer factor 2B
6c9l_C1e-20169169Myocyte-specific enhancer factor 2B
6c9l_D1e-20169169Myocyte-specific enhancer factor 2B
6c9l_E1e-20169169Myocyte-specific enhancer factor 2B
6c9l_F1e-20169169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in seed development (PubMed:21447172, Ref.1, PubMed:29853599). Plays a role in seed morphogenesis by promoting the correct development of endotesta cell layer, which directs the further development of the seed coat, the endosperm, and consequently the embryo (Ref.1, PubMed:29853599). {ECO:0000269|PubMed:21447172, ECO:0000269|PubMed:29853599, ECO:0000269|Ref.1}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010930410.11e-174MADS-box transcription factor 21 isoform X1
RefseqXP_019708448.11e-174MADS-box transcription factor 21 isoform X1
RefseqXP_029122449.11e-174MADS-box transcription factor 21 isoform X1
SwissprotF6I4571e-108AG11C_VITVI; Agamous-like MADS-box protein AGL11
TrEMBLA0A2H3XCY81e-151A0A2H3XCY8_PHODC; MADS-box transcription factor 3-like
STRINGXP_008781978.11e-152(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64937144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-107MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Mejía N, et al.
    Molecular, genetic and transcriptional evidence for a role of VvAGL11 in stenospermocarpic seedlessness in grapevine.
    BMC Plant Biol., 2011. 11: p. 57
    [PMID:21447172]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]
  5. Malabarba J, et al.
    The MADS-box gene Agamous-like 11 is essential for seed morphogenesis in grapevine.
    J. Exp. Bot., 2017. 68(7): p. 1493-1506
    [PMID:28369525]
  6. Royo C, et al.
    The Major Origin of Seedless Grapes Is Associated with a Missense Mutation in the MADS-Box Gene VviAGL11.
    Plant Physiol., 2018. 177(3): p. 1234-1253
    [PMID:29853599]