PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010930364.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family DBB
Protein Properties Length: 188aa    MW: 20278.8 Da    PI: 5.5734
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010930364.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.82e-07347442
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                     +C+ +e+ e+   C  ++  lC  C ++ H        H++vpl
  XP_010930364.1  3 IRCDVCERAEAAVLCCADEAALCWGCDETVHAAnklagkHQRVPL 47
                    58*****************************66899999999986 PP
2zf-B_box32.81.4e-1059100338
        zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 
                      ++C+ ++ek   +fC +++ llC++C +++H        H+
  XP_010930364.1  59 LPTCDICQEKAGYFFCLEDRALLCRQCDVAIHTAspyvssHQ 100
                     689*****************************5556666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.722147IPR000315B-box-type zinc finger
PfamPF006431.5E-5347IPR000315B-box-type zinc finger
CDDcd000219.70E-7347No hitNo description
SMARTSM003366.7E-10447IPR000315B-box-type zinc finger
SuperFamilySSF578451.14E-55397No hitNo description
PROSITE profilePS501199.357104IPR000315B-box-type zinc finger
SMARTSM003369.7E-1557104IPR000315B-box-type zinc finger
PfamPF006433.6E-858100IPR000315B-box-type zinc finger
CDDcd000211.21E-762104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MKIRCDVCER AEAAVLCCAD EAALCWGCDE TVHAANKLAG KHQRVPLLPR ADSTSSSPLP  60
TCDICQEKAG YFFCLEDRAL LCRQCDVAIH TASPYVSSHQ RFLITGVRVA LQHYLTNSSA  120
NNTSSSNGNS TSSNTNSSNP TLSSLASNTS LSSKKLQMAP AGLAMEEVEG LRPPWSWNEI  180
LDGIDLDQ
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010930364.11e-138B-box zinc finger protein 22
RefseqXP_010930365.11e-138B-box zinc finger protein 22
SwissprotQ9SYM23e-57BBX22_ARATH; B-box zinc finger protein 22
TrEMBLM0RRP76e-89M0RRP7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P12670_0011e-89(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121512528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.13e-57light-regulated zinc finger protein 1