PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010930350.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family FAR1
Protein Properties Length: 631aa    MW: 72632.8 Da    PI: 7.5893
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010930350.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR186.63.8e-2791182190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     kfY +YA++vGF+vr+++ ++s+r+++i++r+fvC+keg+  +++k+  + kerr+ra+ r gC+a+++v ++++++w+vtkl  eHnH+++
  XP_010930350.1  91 KFYFDYAERVGFRVRNNRFRTSRRDDSIIMRRFVCYKEGFYLKNEKRknDGKERRNRASIREGCRAMIEVVRKDKDRWVVTKLIIEHNHAFV 182
                     6**************************************9655554434799*************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.2E-2591182IPR004330FAR1 DNA binding domain
PfamPF105511.1E-26275368IPR018289MULE transposase domain
PfamPF044348.1E-11546594IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096611.437559595IPR007527Zinc finger, SWIM-type
SMARTSM005759.4E-5570597IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 631 aa     Download sequence    Send to blast
MDAGAALGLN FNPESIEVDP SDSVLLEDNV GEKEEEEEEG DVENSVVQMN CHSMGTEFPF  60
DGRVQEKLEL EMEPSEPYVG MEFDSLESAR KFYFDYAERV GFRVRNNRFR TSRRDDSIIM  120
RRFVCYKEGF YLKNEKRKND GKERRNRASI REGCRAMIEV VRKDKDRWVV TKLIIEHNHA  180
FVANIRASKP TKKRAPLALH VETRSLFGEG FGAEERPNPV WGGGEGFNLL QYFKKMQTMN  240
PAFFYSIEVD ETNKLKNVFW ADAKARMAYS YFGDVVALDT TYKKNRLMMP FVLFTGVNHH  300
LQPVVFGCSV LLDETEASYI WLFETFLVAM SGRLPVSFVT DHCKALAAAA MKVFHGTHHR  360
FCKWRILSKC KEKLLDICST QAARASLKGD MKKCIDETDT VQEFESSWEA FLLKYNLRDN  420
EWIQSLYEVR QQWVTVYLKD KFFAEMSPSQ RSESMNKFFL RNFETKTSLF EFVAKFDQAI  480
AGQYEKEVQA DFANMITKPV LKSSSSIEKQ ASETFTKTIF SIFQEELVQA LGYSVEKFQD  540
GSACRYHVAL NAEGANRTYD VTFDSSETRA RCSCQKFEFS GIICRHILRV FQAVGLCKLP  600
EGLILKRWTQ KAKSGSVLYE NCAKTSGKCS K
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010930350.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A1D1XZB50.0A0A1D1XZB5_9ARAE; Protein FAR1-RELATED SEQUENCE 5
STRINGXP_008785327.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-155FAR1-related sequence 5