PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010930341.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

NAC

Protein Properties

Length: 338aa MW: 38539.7 Da PI: 7.4008

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010930341.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	159.5	1.3e-49	22	147	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 +pGfrFhPt+ee++ +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekew+f+++rd+ky++g+r+nr+t sgyWkatg d+ + s++ XP_010930341.1 22 MPGFRFHPTEEEIIEFYLRRKVEGKHFNV-ELITFLDLYRYDPWELPALAAIGEKEWFFYVPRDRKYRNGDRPNRVTISGYWKATGADRMIRSEN 115 79*************************.89***********8778899************************************* PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +glkktLvfy+g+apkg +++W+mheyrl XP_010930341.1 116 SRPIGLKKTLVFYSGKAPKGIRSSWIMHEYRL 147 ****************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-55	21	168	IPR003441	NAC domain
PROSITE profile	PS51005	55.534	21	168	IPR003441	NAC domain
Pfam	PF02365	1.6E-24	23	147	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MAIPAAMSGE DEKDEHEHDL VMPGFRFHPT EEEIIEFYLR RKVEGKHFNV ELITFLDLYR 60 YDPWELPALA AIGEKEWFFY VPRDRKYRNG DRPNRVTISG YWKATGADRM IRSENSRPIG 120 LKKTLVFYSG KAPKGIRSSW IMHEYRLPQS ETDRYHKTEI SLCRVYKRGG IEDHLPVMHK 180 PSSKPTRPDK KYKRFYQPSS LFTALAGDSS SSEIEKIHEG GVYSSTNNIS VYSAIPPVSN 240 MTALLKEDGT SLNSSNTLIP TSTLLPSATS SMAIADEFNK MVGCHQGYFN QTSQFITMPS 300 QPQLLPLDGL PMSLATISDN LWEWNQIHEA GKDLTSFK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	2e-55	9	168	8	168	NAC domain-containing protein 19
3swm_B	2e-55	9	168	8	168	NAC domain-containing protein 19
3swm_C	2e-55	9	168	8	168	NAC domain-containing protein 19
3swm_D	2e-55	9	168	8	168	NAC domain-containing protein 19
3swp_A	2e-55	9	168	8	168	NAC domain-containing protein 19
3swp_B	2e-55	9	168	8	168	NAC domain-containing protein 19
3swp_C	2e-55	9	168	8	168	NAC domain-containing protein 19
3swp_D	2e-55	9	168	8	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269\|PubMed:17653269}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269\|PubMed:17653269}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010930341.1	0.0	NAC domain-containing protein 35 isoform X2
Swissprot	Q9ZVP8	1e-101	NAC35_ARATH; NAC domain-containing protein 35
TrEMBL	A0A2H3YP36	0.0	A0A2H3YP36_PHODC; NAC domain-containing protein 35-like
STRING	XP_008801519.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2826	37	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.2	1e-103	NAC domain containing protein 35

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Okajima K Molecular mechanism of phototropin light signaling. J. Plant Res., 2016. 129(2): p. 149-57 [PMID:26815763] Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii. J Phys Chem B, 2018. 122(6): p. 1801-1815 [PMID:29355019]