PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010930267.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

Nin-like

Protein Properties

Length: 947aa MW: 103794 Da PI: 6.0996

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010930267.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	94.3	8.8e-30	562	613	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ XP_010930267.1 562 AEKNISLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 613 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.245	547	633	IPR003035	RWP-RK domain
Pfam	PF02042	2.5E-26	565	613	IPR003035	RWP-RK domain
SuperFamily	SSF54277	7.2E-22	838	932	No hit	No description
SMART	SM00666	8.7E-17	848	930	IPR000270	PB1 domain
PROSITE profile	PS51745	20.908	848	930	IPR000270	PB1 domain
Pfam	PF00564	1.3E-14	849	929	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	2.4E-22	849	930	No hit	No description
CDD	cd06407	6.23E-30	849	929	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 947 aa Download sequence Send to blast
MDGFSPMDCG NGSAEDPFSL SALMNFDGFG EPFSPSTADQ IHSALSYSAA ARLTPGNWSS 60 TGSPNIFAAL GRDALTGDVN VPAAAYSSDG EKVASPRTSM QFVFSPNFFA SDDIPDEGAS 120 FIPKPIAGFS FPERMLKALS FFKDFSSGGI LAQVWMPIKQ GDQYILSTSE QPFLLDQSLA 180 GYREISRQFT FSAKEAPGLF LGLPGRVFIS RMPEWTSNVA YYSKLEYLRV DHAVSHEVRG 240 SLAVPVFDRS KGSRCAVLEL VTTREKPNFD TEMDKVCHAL EAVNLKTTKV RAHQQNLTKN 300 QKSAFTEILD VLRAVCHAHM LPLALTWIPF SYDYHSIDEC IKDDVQEVQS SLREKSMLCI 360 QESACYVNDT RIQGFLHACA EHCLDKGQGI AGKALQSNHP FFSPDVKVYD IREYPLAHHA 420 RKYDLRAAVA IRLRSTYTGN DDYILEFFLP VSCRGSEEQQ LLLNNLSSTM QRICKSLRTV 480 SDAEIIGADV TKVGISRGKG IGSSSTDFSA KCSQLMDSDN ELTTVKHSEN QKMESNEQGG 540 DSYHEQSKSG SMRHMEKKRS TAEKNISLSV LQQYFSGSLK DAAKSIGVCP TTLKRICRQH 600 GISRWPSRKI NKVNRSLKKI QTVINSVQGV EGALRYDPAS GCLVAAVSSP EKPAMMMPES 660 FGRDCTCLSS APHDETEQSI GKSEPDFSSL DVHQQETSGQ LKFTNKPKGE KDELHAPLDG 720 CSNDCKVTSA CGGLLQQANI EGTPSWPIYS KDILRSSYLT KETGCQRAFG KGGLSLQSLE 780 CQIMSKGSGS MMPMDETNAE INADDGIIEH SHPSSSSMTD SSSGSASSCP TFKKSSKSMA 840 DVTESGPVIT VKATYKDDTV RFKFLPSMGC HHLFEEVGKR FKLLVGTFQL KYMDDEEEWV 900 ILAGDSDLQE CLDVLEDVGS RSVKLQVRDV PCATGSSASS NCLLMEP

Sequence ? help Back to Top

Protein Sequence Length: 947 aa Download sequence Send to blast

MDGFSPMDCG NGSAEDPFSL SALMNFDGFG EPFSPSTADQ IHSALSYSAA ARLTPGNWSS  60
TGSPNIFAAL GRDALTGDVN VPAAAYSSDG EKVASPRTSM QFVFSPNFFA SDDIPDEGAS  120
FIPKPIAGFS FPERMLKALS FFKDFSSGGI LAQVWMPIKQ GDQYILSTSE QPFLLDQSLA  180
GYREISRQFT FSAKEAPGLF LGLPGRVFIS RMPEWTSNVA YYSKLEYLRV DHAVSHEVRG  240
SLAVPVFDRS KGSRCAVLEL VTTREKPNFD TEMDKVCHAL EAVNLKTTKV RAHQQNLTKN  300
QKSAFTEILD VLRAVCHAHM LPLALTWIPF SYDYHSIDEC IKDDVQEVQS SLREKSMLCI  360
QESACYVNDT RIQGFLHACA EHCLDKGQGI AGKALQSNHP FFSPDVKVYD IREYPLAHHA  420
RKYDLRAAVA IRLRSTYTGN DDYILEFFLP VSCRGSEEQQ LLLNNLSSTM QRICKSLRTV  480
SDAEIIGADV TKVGISRGKG IGSSSTDFSA KCSQLMDSDN ELTTVKHSEN QKMESNEQGG  540
DSYHEQSKSG SMRHMEKKRS TAEKNISLSV LQQYFSGSLK DAAKSIGVCP TTLKRICRQH  600
GISRWPSRKI NKVNRSLKKI QTVINSVQGV EGALRYDPAS GCLVAAVSSP EKPAMMMPES  660
FGRDCTCLSS APHDETEQSI GKSEPDFSSL DVHQQETSGQ LKFTNKPKGE KDELHAPLDG  720
CSNDCKVTSA CGGLLQQANI EGTPSWPIYS KDILRSSYLT KETGCQRAFG KGGLSLQSLE  780
CQIMSKGSGS MMPMDETNAE INADDGIIEH SHPSSSSMTD SSSGSASSCP TFKKSSKSMA  840
DVTESGPVIT VKATYKDDTV RFKFLPSMGC HHLFEEVGKR FKLLVGTFQL KYMDDEEEWV  900
ILAGDSDLQE CLDVLEDVGS RSVKLQVRDV PCATGSSASS NCLLMEP

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010930267.1	0.0	protein NLP2
Swissprot	Q0JC27	0.0	NLP2_ORYSJ; Protein NLP2
TrEMBL	A0A2H3YLT2	0.0	A0A2H3YLT2_PHODC; protein NLP2-like
STRING	XP_008800674.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3670	35	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]