PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010929614.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | NF-YC | ||||||||
Protein Properties | Length: 238aa MW: 27453 Da PI: 4.8857 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 156.4 | 4.6e-49 | 71 | 172 | 2 | 100 |
NF-YC 2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflv 93 l++fw +q i + dfknh+lP arikki+kadedv+mi+aeaPvl+s+ace+filelt rsw a+enkrrtl+k+dia avtrtd+fdflv XP_010929614.1 71 LQMFWVSQyqeILATIDFKNHSLPWARIKKIMKADEDVRMIAAEAPVLFSRACEMFILELTYRSWAYAQENKRRTLQKNDIAGAVTRTDVFDFLV 165 89****9965566789******************************************************************************* PP NF-YC 94 divprde 100 divp ++ XP_010929614.1 166 DIVPGED 172 ****987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 7.09E-30 | 76 | 164 | IPR009072 | Histone-fold |
Pfam | PF00808 | 6.5E-21 | 92 | 155 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 3.5E-35 | 93 | 169 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MDDSGRRQLP VMSEVQVPNL AMPYQANQMM GSTAPVSSWQ LTTAFQAQFT QHRLSYQHIH 60 KQQLQQLDQT LQMFWVSQYQ EILATIDFKN HSLPWARIKK IMKADEDVRM IAAEAPVLFS 120 RACEMFILEL TYRSWAYAQE NKRRTLQKND IAGAVTRTDV FDFLVDIVPG EDLNEQVNAN 180 DSLSYDHVPP HVGTLGIIMS KPEVDQGLLY AQQPQSYMPQ QFWQQQQTTQ EQQPGEDS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 2e-52 | 76 | 169 | 1 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 142 | 148 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019705030.1 | 1e-178 | nuclear transcription factor Y subunit C-3-like | ||||
Swissprot | Q9ZVL3 | 1e-60 | NFYC3_ARATH; Nuclear transcription factor Y subunit C-3 | ||||
TrEMBL | A0A2H3ZYK8 | 1e-107 | A0A2H3ZYK8_PHODC; nuclear transcription factor Y subunit C-3-like | ||||
STRING | XP_008806484.1 | 1e-108 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3856 | 36 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54830.3 | 4e-59 | nuclear factor Y, subunit C3 |