PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010929554.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 500aa    MW: 54698.9 Da    PI: 8.2264
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010929554.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.9e-056688123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y C+ C+k F r  nL+ H r H
  XP_010929554.1 66 YICEVCHKGFQRDQNLQLHRRGH 88
                    89*******************88 PP
2zf-C2H211.90.00071142164123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC +C+k++  +s+ k H + +
  XP_010929554.1 142 WKCDKCSKRYAVQSDWKAHSKIC 164
                     58*****************9876 PP
3zf-C2H210.80.0016172190523
                     TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                     dCg+ Fsrk+++++H   +
  XP_010929554.1 172 DCGTIFSRKDSFVTHRAFC 190
                     9**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.5E-56588IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.46E-66588No hitNo description
PROSITE profilePS5015710.7416688IPR007087Zinc finger, C2H2
SMARTSM003550.0386688IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
SMARTSM0035554107137IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.0E-5130163IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.46E-6137162No hitNo description
SMARTSM00355140142162IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MSNTSGEESQ NTPRQQLQMG GCTPVSSKGD TSAPVTKKRR SLPGNPDPDA EVIALSPRTL  60
LATNRYICEV CHKGFQRDQN LQLHRRGHNL PWKLKQRSST EAKKRVYVCP EVSCTHHDPS  120
RALGDLTGIK KHYSRKHGEK KWKCDKCSKR YAVQSDWKAH SKICGTKEYR CDCGTIFSRK  180
DSFVTHRAFC DALTEENYRI NHGLAAMVGS LHSQAQDMLS HSMPSLTTDT ITNPSNSDQN  240
SNNPLRSLSL NPLIPGSSDM LFNQSSAHTS CLQLSGSGSS SHHMPMGSSF MSATALLQKA  300
AEMGAKVSDD SISPILLRGF TGYSATSRAS GSRKEPFSGH GDTSSQQCLD SSIETSAVRN  360
LGLMSTTSGG SYVENHSALQ ANSKWTTSDF RPTTFPLQGG VVNLSLPMRA ENQNSTVVLE  420
GQMQQNTCQG IAEDREVRMT QDFLGLGPLG NVGFGHPNYH DESAVALNYS DGQQPSGHAM  480
YPYHQMPDSS NALEKPTWDF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-33138200365Zinc finger protein JACKDAW
5b3h_F1e-33138200365Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010929554.10.0zinc finger protein GAI-ASSOCIATED FACTOR 1-like
SwissprotQ9SCQ61e-110IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A2H3YDT80.0A0A2H3YDT8_PHODC; protein indeterminate-domain 2-like
STRINGXP_008797147.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114253240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-109indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]