PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010929553.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ERF
Protein Properties Length: 301aa    MW: 31953.2 Da    PI: 6.0807
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010929553.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.2e-184999155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ++y GVr+++ +gr++AeIrdp +   + r++lg+f+taeeAa a+++a++ l+g
  XP_010929553.1 49 TRYLGVRRRP-WGRYAAEIRDPAT---KERHWLGTFDTAEEAAVAYDRAARTLRG 99
                    5799******.**********843...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.70E-3049108No hitNo description
Gene3DG3DSA:3.30.730.106.0E-2950107IPR001471AP2/ERF domain
PfamPF008471.1E-105099IPR001471AP2/ERF domain
PROSITE profilePS5103221.62850107IPR001471AP2/ERF domain
SMARTSM003802.4E-3350113IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-2150107IPR016177DNA-binding domain
PRINTSPR003671.7E-85162IPR001471AP2/ERF domain
PRINTSPR003671.7E-87389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MDFSYFFSSS SSSSSTTSPI SNVPQDKKPK RKSPQKQQDN SSNGTGGSTR YLGVRRRPWG  60
RYAAEIRDPA TKERHWLGTF DTAEEAAVAY DRAARTLRGP RARTNFAYPD LPPGSSLTPF  120
LSPDLQQHNL LLPFYTSSTT HDSPRPPAVP LPHHQPFAGH EAMNAAGIHQ PDQLYYSSSS  180
SSSSSSLLTP LTPSPTPMAS LKAMPSESDA PLVECSNAGL AEEVAAAMWC DVGEFNACGS  240
PVPASGGCGG MFFEEGYVHS PLFGPMPAVD DAAAPPGLAD GFQLGGSSSS SWGSSSSSYF  300
F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1851106359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A4e-1839106271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010929553.10.0ethylene-responsive transcription factor LEP-like
TrEMBLA0A2H3YDY81e-147A0A2H3YDY8_PHODC; ethylene-responsive transcription factor LEP-like
STRINGXP_008797100.11e-148(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18853397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.13e-29ERF family protein