PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010929471.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB_related
Protein Properties Length: 348aa    MW: 38864.2 Da    PI: 4.8738
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010929471.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.37.3e-1361104146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg +++eEd+++  +    G++ W+ Ia+ ++ gRt++++k++w++
   XP_010929471.1  61 RGGFSEEEDQIICSLYISIGSR-WSIIAAQLP-GRTDNDVKNYWNT 104
                      788*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.2E-124168IPR009057Homeodomain-like
SuperFamilySSF466895.13E-2141110IPR009057Homeodomain-like
PROSITE profilePS500904.0774255IPR017877Myb-like domain
PROSITE profilePS5129422.40656110IPR017930Myb domain
SMARTSM007176.7E-1260108IPR001005SANT/Myb domain
PfamPF002492.3E-1161104IPR001005SANT/Myb domain
CDDcd001672.86E-864106No hitNo description
Gene3DG3DSA:1.10.10.604.8E-1869107IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MPDVTVTCWQ TEFYSFFLAS AAAGFVITDS SGSFLGGGGL KRCGKSCRLR WLNYLRPDIK  60
RGGFSEEEDQ IICSLYISIG SRWSIIAAQL PGRTDNDVKN YWNTRLKKKL FGKRRDSCSR  120
QSSRLSINHD PKEETNGMSP DASSQALSTS ALERMQLHKQ LQGLYDPFSF YNNPALWPKF  180
HPLGGEKLFF HIQHTDANTI AATPVPQASD ATMIEPSGQN VFLIKPEMLN PTDPSIQEDP  240
NSSTLAFPSP SSSGALSVEN SNSNFNDAAV GLQDELHDLL YQKIGCSRGP EQQQQTEFDC  300
YKDLNGEKES MNWWATDGFE KSLSGSWDSV SNLQADLLNE YDEFGYRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-194211040108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010929471.10.0transcription factor MYB36
TrEMBLA0A2H3X4871e-163A0A2H3X487_PHODC; transcription factor MYB36-like
STRINGXP_008778085.11e-164(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.13e-55myb domain protein 36