PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010929406.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ARF
Protein Properties Length: 1067aa    MW: 118903 Da    PI: 6.8369
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010929406.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3651.2e-20128221189
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae++       + +++  ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F + + s
  XP_010929406.1 128 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QELQARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRASPS 220
                     99*****************************954.4444.49***********************************************955444 PP

                     E CS
              B3  89 e 89 
                     e
  XP_010929406.1 221 E 221
                     4 PP
2Auxin_resp90.43.1e-302162821883
      Auxin_resp  18 rastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     ras+seFv++++k++ka++ +++s+GmRf+m+feteds +rr++Gt++g+ dldp+rW+nS+Wr+L+
  XP_010929406.1 216 RASPSEFVIPFAKYQKAVYsNQISLGMRFRMMFETEDSGTRRYMGTITGIGDLDPMRWKNSPWRNLQ 282
                     89****************989********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.49E-38118223IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.8E-35121222IPR015300DNA-binding pseudobarrel domain
CDDcd100172.94E-18127224No hitNo description
PfamPF023629.1E-19128222IPR003340B3 DNA binding domain
PROSITE profilePS5086311.025128230IPR003340B3 DNA binding domain
SMARTSM010193.1E-19128229IPR003340B3 DNA binding domain
PfamPF065072.2E-25216282IPR010525Auxin response factor
PfamPF023099.6E-99311019IPR033389AUX/IAA domain
PROSITE profilePS5174528.1219341018IPR000270PB1 domain
SuperFamilySSF542774.51E-79471012No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0010311Biological Processlateral root formation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1067 aa     Download sequence    Send to blast
MKGPVNAAAA ANPSEGERKT INPELWYACA GPLVTLPPVG SLVVYFPQGH SEQVAASMQK  60
DIDAHIPSYP NLPSKLICLL HNVTLHADPE TDEVYAQMTL QPVNTYDKEA LQASELALKQ  120
TRPQTDFFCK TLTASDTSTH GGFSVPRRAA EKIFPPLDFS MQPPAQELQA RDLHDNVWTF  180
RHIYRGQPKR HLLTTGWSLF VSGKRLFAGD SVLFIRASPS EFVIPFAKYQ KAVYSNQISL  240
GMRFRMMFET EDSGTRRYMG TITGIGDLDP MRWKNSPWRN LQVGWDESAA GERRTRVSIW  300
EIEPVAAPFF ICPAPFFRPK RPKQPGMPDD ESSEMENIFK RAMPWLDEEI CIKDSQTQNT  360
VMPGLSLVQW ISMQQNPSLA NPTMQTDYLR SLTGPSMQNL GATDLSRQLS MQAQFLQQNN  420
TQFNSRLPQQ NQQLDQLSKV SVPLNQLGIV TRPPQQMQDV QRQQLVNQSL PVNQTPTSLI  480
QSQILVQAQV QQQQSVIQSH QPLQTNLQQN QPQHQQLLLQ QQQLLQEQLS HQQQNPLQQQ  540
LQQQQNRTSV QLPNHINKRL QLTDHQIQLQ LLQKLQQQQP LSQPTVQHLQ LPQIQEQQKP  600
LLKLPHQLSN SHSLMQQNMI PQQCAKATSQ AVWLPQSLLQ QSQQKLQQQQ VVPSELNGAV  660
LPPTPKTGVL STTGTSLLAA GGAQSGLTED VPSCSTSPSM NNGAVLPLPM LNGTHHLSTI  720
TTDKTSQSAV TILSHNSFEA VAASPNIAKE LPKSVHNVKA STPISKVQTQ GVIAPQMYTS  780
NAAQMDYLDT TSSATSVCLS QTDGPLPQSF LLSSFNQPSM LRDAPPSSEV QGTDPRNNVL  840
FGVNIDCPLG IPLTTDALLA NSIDSGKYQN HVSGNVIANH STSKDAQQEL SSSLVSHSFG  900
VPDMAFNSID STINESSFLH RSSWVPAPSL QRMRTYTKVY KRGAVGRSID ITRYSGYDEL  960
KHDLARMFSI EGQLEDRQRI GWKLVYVDHE NDVLLVGDDP WEEFVNCVRC IKILSPQEVQ  1020
QMRLEGDLEN NILPNQACSS SDGGNKWRGQ CEQNSCNPSA GSYDRLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1271630345388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010929406.10.0auxin response factor 19 isoform X2
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLA0A2H3YNG10.0A0A2H3YNG1_PHODC; Auxin response factor
STRINGXP_008801434.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19