PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010929405.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | ARF | ||||||||
Protein Properties | Length: 1122aa MW: 124817 Da PI: 6.9696 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 68.6 | 8.6e-22 | 128 | 228 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae++ + +++ ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F +++ XP_010929405.1 128 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QELQARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--RDE 218 99*****************************954.4444.49************************************************..557 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 +++l+++++ XP_010929405.1 219 KQQLLLGIRH 228 8888999886 PP | |||||||
2 | Auxin_resp | 121.2 | 7.8e-40 | 254 | 337 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+v+YnPras+seFv++++k++ka++ +++s+GmRf+m+feteds +rr++Gt++g+ dldp+rW+nS+Wr+L+ XP_010929405.1 254 AAHAAANNSPFTVFYNPRASPSEFVIPFAKYQKAVYsNQISLGMRFRMMFETEDSGTRRYMGTITGIGDLDPMRWKNSPWRNLQ 337 79*********************************989********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.36E-43 | 118 | 257 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.2E-40 | 121 | 243 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.39E-18 | 127 | 219 | No hit | No description |
PROSITE profile | PS50863 | 11.42 | 128 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.3E-20 | 128 | 229 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.8E-21 | 128 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 4.1E-35 | 254 | 337 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.1E-8 | 987 | 1074 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 28.121 | 989 | 1073 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 4.81E-7 | 1002 | 1067 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0010311 | Biological Process | lateral root formation | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 1122 aa Download sequence Send to blast |
MKGPVNAAAA ANPSEGERKT INPELWYACA GPLVTLPPVG SLVVYFPQGH SEQVAASMQK 60 DIDAHIPSYP NLPSKLICLL HNVTLHADPE TDEVYAQMTL QPVNTYDKEA LQASELALKQ 120 TRPQTDFFCK TLTASDTSTH GGFSVPRRAA EKIFPPLDFS MQPPAQELQA RDLHDNVWTF 180 RHIYRGQPKR HLLTTGWSLF VSGKRLFAGD SVLFIRDEKQ QLLLGIRHAN RQPTNISSSV 240 LSSDSMHIGI LAAAAHAAAN NSPFTVFYNP RASPSEFVIP FAKYQKAVYS NQISLGMRFR 300 MMFETEDSGT RRYMGTITGI GDLDPMRWKN SPWRNLQVGW DESAAGERRT RVSIWEIEPV 360 AAPFFICPAP FFRPKRPKQP GMPDDESSEM ENIFKRAMPW LDEEICIKDS QTQNTVMPGL 420 SLVQWISMQQ NPSLANPTMQ TDYLRSLTGP SMQNLGATDL SRQLSMQAQF LQQNNTQFNS 480 RLPQQNQQLD QLSKVSVPLN QLGIVTRPPQ QMQDVQRQQL VNQSLPVNQT PTSLIQSQIL 540 VQAQVQQQQS VIQSHQPLQT NLQQNQPQHQ QLLLQQQQLL QEQLSHQQQN PLQQQLQQQQ 600 NRTSVQLPNH INKRLQLTDH QIQLQLLQKL QQQQPLSQPT VQHLQLPQIQ EQQKPLLKLP 660 HQLSNSHSLM QQNMIPQQCA KATSQAVWLP QSLLQQSQQK LQQQQVVPSE LNGAVLPPTP 720 KTGVLSTTGT SLLAAGGAQS GLTEDVPSCS TSPSMNNGAV LPLPMLNGTH HLSTITTDKT 780 SQSAVTILSH NSFEAVAASP NIAKELPKSV HNVKASTPIS KVQTQGVIAP QMYTSNAAQM 840 DYLDTTSSAT SVCLSQTDGP LPQSFLLSSF NQPSMLRDAP PSSEVQGTDP RNNVLFGVNI 900 DCPLGIPLTT DALLANSIDS GKYQNHVSGN VIANHSTSKD AQQELSSSLV SHSFGVPDMA 960 FNSIDSTINE SSFLHRSSWV PAPSLQRMRT YTKVYKRGAV GRSIDITRYS GYDELKHDLA 1020 RMFSIEGQLE DRQRIGWKLV YVDHENDVLL VGDDPWEEFV NCVRCIKILS PQEVQQMRLE 1080 GDLENNILPN QACSSSDGGN KWRGQCEQNS CNPSAGSYDR LE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-167 | 16 | 358 | 45 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010929405.1 | 0.0 | auxin response factor 19 isoform X1 | ||||
Swissprot | Q6Z2W3 | 0.0 | ARFE_ORYSJ; Auxin response factor 5 | ||||
TrEMBL | A0A2H3YNG1 | 0.0 | A0A2H3YNG1_PHODC; Auxin response factor | ||||
STRING | XP_008801434.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1409 | 35 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | auxin response factor 19 |