PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010929337.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GATA
Protein Properties Length: 327aa    MW: 34320.1 Da    PI: 7.6141
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010929337.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.34.4e-18243280136
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkglk 36 
                     C++Cgt++  Tp++Rrgpdg++tLCnaCGl+++ kg++
  XP_010929337.1 243 CHHCGTSSkaTPMMRRGPDGPRTLCNACGLMWANKGTM 280
                     ***********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009792.7E-12107142IPR010399Tify domain
PROSITE profilePS5132014.892107142IPR010399Tify domain
PfamPF062006.2E-13110141IPR010399Tify domain
PfamPF062036.3E-16168210IPR010402CCT domain
PROSITE profilePS5101713.304168210IPR010402CCT domain
SMARTSM004017.6E-13237290IPR000679Zinc finger, GATA-type
PROSITE profilePS5011410237299IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.75E-13241294No hitNo description
Gene3DG3DSA:3.30.50.102.9E-16242284IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.31E-16242285No hitNo description
PfamPF003201.0E-15243280IPR000679Zinc finger, GATA-type
PROSITE patternPS003440243270IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MSQSPTKPAD VKPLAGGRYT ARHPAPAHPA VPLPGRIDDA SGSGGGGGEG QLIVAADAQA  60
IQQYAADGGA GDGMEEDHDG VAEGEGMEGD VPSDHANLGD PHGVVAPQVG ANQLTLSFQG  120
EVYVFDSVSP EKVQAVLLLL GGREINTGLA SGPSSSNPYN KRSNFPQRVA SLMRFREKRK  180
ERNFDKKIRY NVRKEVALRM QRNRGQFTSS KSKPEDAAAG ITSLDVSQRW GSVEGRPESA  240
ATCHHCGTSS KATPMMRRGP DGPRTLCNAC GLMWANKGTM RDLSKNSPAA TQNALLETKE  300
GDGNGAAVGE QQQQPLPITA NGHGSSS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010929337.10.0GATA transcription factor 20
SwissprotQ5Z4U51e-112GAT20_ORYSJ; GATA transcription factor 20
TrEMBLA0A2H3ZBR90.0A0A2H3ZBR9_PHODC; GATA transcription factor 20-like
STRINGXP_008811434.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43253868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.23e-83ZIM-like 1