PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010929108.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family TALE
Protein Properties Length: 411aa    MW: 44594.6 Da    PI: 5.9905
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010929108.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.12.7e-073613932254
                     SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      +yp+++++++L +++gL+ +q+ +WF N+R +
  XP_010929108.1 361 WPYPTEDDKARLVQETGLQLKQINNWFINQRKR 393
                     58*****************************87 PP
2ELK28.92.7e-10314335122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELKh+L+++Y+++++++++E++
  XP_010929108.1 314 ELKHELKQGYKEKIVDIREEIL 335
                     9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012555.9E-20148192IPR005540KNOX1
PfamPF037904.3E-18150191IPR005540KNOX1
SMARTSM012561.9E-25201256IPR005541KNOX2
PfamPF037917.7E-18207255IPR005541KNOX2
SMARTSM011886.1E-4314335IPR005539ELK domain
PfamPF037899.5E-7314335IPR005539ELK domain
PROSITE profilePS512139.969314334IPR005539ELK domain
PROSITE profilePS5007111.58334397IPR001356Homeobox domain
SuperFamilySSF466896.42E-16336400IPR009057Homeodomain-like
SMARTSM003894.7E-11336401IPR001356Homeobox domain
CDDcd000863.66E-11337398No hitNo description
Gene3DG3DSA:1.10.10.604.3E-25341398IPR009057Homeodomain-like
PfamPF059203.0E-17354393IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MAFHSHLSHE MALPPYAEQQ LGEGPAVLTT SDEAVRKASG GGGGGPSWLS SAVLRQQGHN  60
YGADGSFLHL QTASDSSASP AAGAGGVQWL PRPQMRGSDE ENPVSGESMI VAAMSHGGRG  120
GGSSVQGGGA GEGEAEAAAA GEGTWQNARY KAEILSHPLY EQLLAAHVAC LRIATPVDQL  180
SRIDAQLAQS QHVVAKYSML GAAANTDDKE LNQFMTHYVL LLCSFKEQLQ QHVRVHAMEA  240
VMACWELEQS LQSLTGVSPG EGTGATMSDD DDDDQADSDT NLFDGSLDGP DSMGFGPLVP  300
TESERSLMER VRQELKHELK QGYKEKIVDI REEILRKRRA GKLPGDSTSL LKAWWQSHSK  360
WPYPTEDDKA RLVQETGLQL KQINNWFINQ RKRNWHSNPS SSTALKSKRK R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A3e-13337401872Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1390410RKRNWHSNPSSSTALKSKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010929108.10.0homeobox protein knotted-1-like 13
SwissprotP480001e-178KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A2H3XK140.0A0A2H3XK14_PHODC; homeobox protein knotted-1-like 13 isoform X2
STRINGXP_008784810.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-168KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]