PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010929007.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family NF-YC
Protein Properties Length: 175aa    MW: 19867.4 Da    PI: 5.9243
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010929007.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC173.13e-54491521101
           NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 
                     ql+ fw++q   ie+++dfknh+lPlarikki+kadedv+mi+aeaPv++++ace+filelt rsw haeenkrrtl+k+diaaa+trtd+fdfl
  XP_010929007.1  49 QLQIFWADQyreIEQTSDFKNHSLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILELTHRSWAHAEENKRRTLQKNDIAAAITRTDVFDFL 143
                     89*****99999*********************************************************************************** PP

           NF-YC  93 vdivprdel 101
                     vdivprde 
  XP_010929007.1 144 VDIVPRDEG 152
                     ******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471134.36E-3341143IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.5E-3762135IPR009072Histone-fold
PfamPF008081.7E-2171134IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MDQQGHPTPP VIGVAAPVPY PAAAAAASSG PYQAYQHLYH QQQQQQQQQL QIFWADQYRE  60
IEQTSDFKNH SLPLARIKKI MKADEDVRMI AAEAPVVFAR ACEMFILELT HRSWAHAEEN  120
KRRTLQKNDI AAAITRTDVF DFLVDIVPRD EGKEDVPRPL GAPPTDPLSY YYVPQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B8e-5957149395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121127RRTLQKN
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010929007.11e-127nuclear transcription factor Y subunit C-6
RefseqXP_010929008.11e-127nuclear transcription factor Y subunit C-6
SwissprotQ9XE332e-65NFYC6_ORYSJ; Nuclear transcription factor Y subunit C-6
TrEMBLA0A444ERM23e-95A0A444ERM2_ENSVE; Uncharacterized protein
STRINGXP_008782988.18e-95(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38563676
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.22e-64nuclear factor Y, subunit C2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SK, et al.
    OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice.
    Planta, 2016. 243(3): p. 563-76
    [PMID:26542958]