PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010928969.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 228aa MW: 26251.6 Da PI: 7.8044 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.3 | 7.5e-20 | 93 | 147 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeql+ Le+ F+++++++++++++LA +l+L rqV vWFqNrRa+ k XP_010928969.1 93 RKKLRLTKEQLTLLEKRFREHHTLNQTQKQQLAGQLNLRPRQVEVWFQNRRARTK 147 678899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 114 | 9.2e-37 | 93 | 181 | 1 | 89 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl+keq++lLE+ F+e+++L++++K++la +L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+ +++l+ en+rL++e eeLr+ XP_010928969.1 93 RKKLRLTKEQLTLLEKRFREHHTLNQTQKQQLAGQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKYCENLRIENRRLKRELEELRA 181 69*************************************************************************************94 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.11E-19 | 83 | 150 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.3E-19 | 88 | 152 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.896 | 89 | 149 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.4E-15 | 91 | 153 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.7E-17 | 93 | 147 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.42E-14 | 93 | 150 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 124 | 147 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 6.5E-9 | 149 | 182 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 7.3E-16 | 149 | 192 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MEEDECNIGL GLAIGGGRHF SSHQSSNGGG KSPVQFHILF PPQQKQGEEE EEEEEEEEEP 60 RREEQHKSKN INEEEDTMSA KDISDGGSNQ VGRKKLRLTK EQLTLLEKRF REHHTLNQTQ 120 KQQLAGQLNL RPRQVEVWFQ NRRARTKLKQ TEVDCEFLKK YCENLRIENR RLKRELEELR 180 AMEPGCPFHI RVPKAATLLT MCPSCKRISD KGNGALDTMK GRPSGSCK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 141 | 149 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010928969.1 | 1e-167 | homeobox-leucine zipper protein HAT22-like | ||||
Swissprot | A2Z1U1 | 8e-50 | HOX11_ORYSI; Homeobox-leucine zipper protein HOX11 | ||||
Swissprot | Q67UE2 | 7e-49 | HOX11_ORYSJ; Homeobox-leucine zipper protein HOX11 | ||||
TrEMBL | A0A3Q0I4S7 | 1e-110 | A0A3Q0I4S7_PHODC; homeobox-leucine zipper protein HAT9-like | ||||
STRING | XP_008789723.1 | 1e-106 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8130 | 34 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 2e-40 | homeobox from Arabidopsis thaliana |