PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010928897.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

GRAS

Protein Properties

Length: 430aa MW: 47516.6 Da PI: 6.6499

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010928897.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	392.3	5.4e-120	40	430	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 ++lL++cAe ++ gdl a+++ + ls+ asp+gd+ Rl++ f++AL+ rl + +l+ a ps+ s ++s+ +++ +++v+P+l+f+hl XP_010928897.1 40 RQLLISCAELIHCGDLPTARRTASLLSTAASPYGDSADRLTHQFARALSLRLDS-LARLSLAS-PSAPSLTSSEALQSSYLSLNQVTPFLRFAHL 132 79*************************************************9.44444333.333333335555566666********* PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl........ 181 taNqaIlea++ + r+Hi+Dfd s+G+QWp+Llqa+a+R+ +gpps+RiTg g + l++tg+rL+ fA++lg++f+f++l XP_010928897.1 133 TANQAILEALDASPRIHILDFDTSHGVQWPPLLQAIAERSnaHGPPSIRITGTGT----DLGVLRRTGDRLQTFAHSLGLQFQFHPLllpitgtn 223 ************************************8889*******....9******************************* PP GRAS 182 ..........vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles...erdevLklvkslsPkvvvvveqeadhnsesFlerflealey 263 +++++++l+ ++++++pgE+laVn+vl lh+l+++ + ++ e +++L++vk ++P vv+v+e ea+hns+ Fl+rf+eal+y XP_010928897.1 224 ttspstsilsTSTATTNLTSSSFQLHPGETLAVNCVLFLHKLFQDGRNEDDgsrELRAFLEAVKAMNPGVVTVAEMEASHNSPIFLQRFMEALDY 318 99999998776778889999999****************77666666767789********************************** PP GRAS 264 ysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgs 357 y+++f+slea+lp+ s+er vE+++lgrei++++a+eg+ rrerhe++++W+ ++ aGF+++pls +a +qaklllr ++ s+gy+++ +s XP_010928897.1 319 YTVVFESLEATLPPRSQERLAVEQVWLGREIEDIIAHEGEGRRERHERFARWEGLMRGAGFSNLPLSPFALSQAKLLLRLHYpSEGYQLQMVGDS 413 ******************************************************************************************* PP GRAS 358 lvlgWkdrpLvsvSaWr 374 ++lgW++++L+svS+Wr XP_010928897.1 414 IFLGWQNKALFSVSSWR 430 **************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	60.463	13	409	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.9E-117	40	430	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010014	Biological Process	meristem initiation
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence Send to blast
MLSSLKSHEE GEEDPDPPHH HHHHHPNPQH GLISLSAHAR QLLISCAELI HCGDLPTARR 60 TASLLSTAAS PYGDSADRLT HQFARALSLR LDSLARLSLA SPSAPSLTSS EALQSSYLSL 120 NQVTPFLRFA HLTANQAILE ALDASPRIHI LDFDTSHGVQ WPPLLQAIAE RSNAHGPPSI 180 RITGTGTDLG VLRRTGDRLQ TFAHSLGLQF QFHPLLLPIT GTNTTSPSTS ILSTSTATTN 240 LTSSSFQLHP GETLAVNCVL FLHKLFQDGR NEDDGSRELR AFLEAVKAMN PGVVTVAEME 300 ASHNSPIFLQ RFMEALDYYT VVFESLEATL PPRSQERLAV EQVWLGREIE DIIAHEGEGR 360 RERHERFARW EGLMRGAGFS NLPLSPFALS QAKLLLRLHY PSEGYQLQMV GDSIFLGWQN 420 KALFSVSSWR

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence Send to blast

MLSSLKSHEE GEEDPDPPHH HHHHHPNPQH GLISLSAHAR QLLISCAELI HCGDLPTARR  60
TASLLSTAAS PYGDSADRLT HQFARALSLR LDSLARLSLA SPSAPSLTSS EALQSSYLSL  120
NQVTPFLRFA HLTANQAILE ALDASPRIHI LDFDTSHGVQ WPPLLQAIAE RSNAHGPPSI  180
RITGTGTDLG VLRRTGDRLQ TFAHSLGLQF QFHPLLLPIT GTNTTSPSTS ILSTSTATTN  240
LTSSSFQLHP GETLAVNCVL FLHKLFQDGR NEDDGSRELR AFLEAVKAMN PGVVTVAEME  300
ASHNSPIFLQ RFMEALDYYT VVFESLEATL PPRSQERLAV EQVWLGREIE DIIAHEGEGR  360
RERHERFARW EGLMRGAGFS NLPLSPFALS QAKLLLRLHY PSEGYQLQMV GDSIFLGWQN  420
KALFSVSSWR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	5e-62	36	430	1	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269\|PubMed:12730136}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010928897.2	0.0	protein MONOCULM 1
Swissprot	Q9ZWC5	1e-116	SCL18_ARATH; Scarecrow-like protein 18
TrEMBL	A0A2H3XFQ2	0.0	A0A2H3XFQ2_PHODC; protein MONOCULM 1-like
STRING	XP_008783096.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3653	34	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55580.1	1e-104	GRAS family protein

Publications ? help Back to Top
Zhang B, et al. Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat. Sci Rep, 2015. 5: p. 12211 [PMID:26197925]