PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010928832.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
|
||||||||
Family | SBP | ||||||||
Protein Properties | Length: 367aa MW: 39291.9 Da PI: 8.8449 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 136.1 | 1.1e-42 | 73 | 148 | 1 | 76 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +CqvegC++dl+ ak y+ rhkvC +hsk+p+v+v+gleqrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+ XP_010928832.1 73 RCQVEGCKVDLTGAKAYYCRHKVCGMHSKSPKVIVAGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKP 148 6*************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 5 | 1 | 15 | No hit | No description |
Gene3D | G3DSA:4.10.1100.10 | 4.8E-35 | 66 | 135 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.214 | 71 | 148 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.27E-40 | 72 | 152 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.4E-32 | 74 | 147 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:2000025 | Biological Process | regulation of leaf formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 367 aa Download sequence Send to blast |
MERGCSSSLA VSGACGSNDS HHGLKFGKKI YFEDGVGGGS STKASSTTAS ASASPTPPKR 60 GKGVVQGGQQ PPRCQVEGCK VDLTGAKAYY CRHKVCGMHS KSPKVIVAGL EQRFCQQCSR 120 FHQLPEFDQG KRSCRRRLAG HNERRRKPPP GSLSSRIGRM SSSFHEDNSR FRGFLMDFTH 180 PRLPGTTQEV WPTVRAGDRM PSHQWQSSLG APPPGEVAPH GACRYMQVST AGTLFSPPEI 240 PPSECLSGAS DSKCALSLLS TQPWGSTATR NDRASTIPAS SSFSGAPMAH PVISNHYVAS 300 SWGFKGHEGG SSSLGVHHEL GLGQVSQPDD SQFSGELELA LQGSRQCMDL DPSRAYGHSD 360 DVIHWSL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 7e-30 | 74 | 147 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00307 | DAP | Transfer from AT2G42200 | Download |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010928832.1 | 0.0 | squamosa promoter-binding-like protein 14 | ||||
Swissprot | A3C057 | 8e-86 | SPL17_ORYSJ; Squamosa promoter-binding-like protein 17 | ||||
TrEMBL | A0A2H3XF46 | 0.0 | A0A2H3XF46_PHODC; squamosa promoter-binding-like protein 17 | ||||
STRING | XP_008782879.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2527 | 37 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G42200.1 | 7e-53 | squamosa promoter binding protein-like 9 |