PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010928827.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C3H
Protein Properties Length: 297aa    MW: 31128.3 Da    PI: 9.7649
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010928827.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.21.2e-07101126227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     kt+ C+ +     C++G++C+FaHg+
  XP_010928827.1 101 KTKMCNKYNTAEGCRFGEKCHFAHGE 126
                     899*********************96 PP
2zf-CCCH375.5e-12264288126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ykt+lC +f++ G C +G+rC+FaHg
  XP_010928827.1 264 YKTKLCENFSK-GSCTFGERCHFAHG 288
                     9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.83461IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.0423462IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.68E-63560IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-73659IPR000571Zinc finger, CCCH-type
PfamPF146081.64259No hitNo description
Gene3DG3DSA:4.10.1000.101.1E-1496130IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.61999127IPR000571Zinc finger, CCCH-type
SMARTSM003560.09899126IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-899129IPR000571Zinc finger, CCCH-type
PfamPF146080.076105125No hitNo description
SuperFamilySSF547911.9E-15163241IPR004088K Homology domain, type 1
SMARTSM003222.2E-11169239IPR004087K Homology domain
PROSITE profilePS5008414.047170234IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.102.0E-15170238IPR004088K Homology domain, type 1
CDDcd001052.86E-14172234No hitNo description
PfamPF000131.5E-10172236IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.102.4E-16261294IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-7263289IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.765263290IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.46E-9263294IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-9264288IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
METARKRMRP EAANGGAAGQ KRLKETESFQ PGLGSKSKPC TKFFSTAGCP FGEGCHFLHY  60
VPGGIQAVAQ MTNLGNPAVP PTRNPVLPPA IPDGPPGPAV KTKMCNKYNT AEGCRFGEKC  120
HFAHGERELG RPIPATHDGP MAPPMGGRLA GRLEPXPPAG LPATASFGAS ATAKISVDAS  180
LAGAIIGKGG VNTKQICRIT GVRLAIRDHE SDPNLRNIEL EGTFDQIKHA SGMVRELIVN  240
ISSNTPLPVK NPAGAAPGGP GNNYKTKLCE NFSKGSCTFG ERCHFAHGAN ELRKTSA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008782861.10.0zinc finger CCCH domain-containing protein 14
SwissprotQ7F8R01e-133C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A2H3XFA80.0A0A2H3XFA8_PHODC; zinc finger CCCH domain-containing protein 14
STRINGXP_008782861.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.11e-73C3H family protein