PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010928706.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GATA
Protein Properties Length: 330aa    MW: 35322.5 Da    PI: 7.3772
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010928706.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.46.4e-16252289136
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkglk 36 
                     C++Cg +   Tp++Rrgp+g++tLCnaCGl ++ kg++
  XP_010928706.1 252 CHHCGISAksTPMMRRGPEGPRTLCNACGLVWANKGTM 289
                     ****977777*************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009793.0E-12116151IPR010399Tify domain
PROSITE profilePS5132014.689116151IPR010399Tify domain
PfamPF062001.4E-12120150IPR010399Tify domain
PfamPF062038.8E-17177219IPR010402CCT domain
PROSITE profilePS5101713.364177219IPR010402CCT domain
SMARTSM004011.8E-13246299IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.906246303IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.98E-12250298No hitNo description
Gene3DG3DSA:3.30.50.101.5E-15251293IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.21E-16251302No hitNo description
PfamPF003201.2E-13252289IPR000679Zinc finger, GATA-type
PROSITE patternPS003440252279IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MSENPNPPVD VKPAACGRFS GYYIHKPAAA HQVLPVVAMP VQIDGGRGGG GESHLIAAAD  60
TQALQRYEEA EHHGGGVGGG HGMEEDRDVA VDGEAMEADG EADPGNLGDP QAAIAPQVGG  120
NQLTLSFQGE VYVFDSVSPE KVQAVLLLLG GREMNTALNS FPSSSHIHNR RINFPHRVAS  180
LMRFREKRKE RNFDKKIRYN VRKEVALRMQ RNKGQFISSK PKPEDSSSGI TSWDTTQQWG  240
SPENRPPAAS ACHHCGISAK STPMMRRGPE GPRTLCNACG LVWANKGTMR DLSKNPPSAI  300
PNALTEPKEG NSAESGAAQP LVIAANGHDS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14450GGRGGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010928706.10.0GATA transcription factor 17
SwissprotQ5Z4U51e-101GAT20_ORYSJ; GATA transcription factor 20
TrEMBLA0A2H3XW060.0A0A2H3XW06_PHODC; GATA transcription factor 20-like
STRINGXP_008789600.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43253868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.25e-83ZIM-like 1