PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010928631.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family CO-like
Protein Properties Length: 359aa    MW: 38095.9 Da    PI: 7.384
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010928631.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.74.7e-081858438
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Ht 38
                    r+C+ ++  ++ lfC+ +  +lC +C    H g       H+
  XP_010928631.1 18 RRCDSCKGSPALLFCRADTAYLCGTCDARVH-GanklasrHE 58
                    89*************************9999.4466666666 PP
2zf-B_box27.18.7e-0960105342
        zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                      ++C+ +e+ +++  C+ +   lC +C   +H+       H++vp+
  XP_010928631.1  60 VWMCAVCEQAPASVTCKADAAALCVSCDADIHSAnplarrHERVPV 105
                     689*****************************66899999999986 PP
3CCT70.73.7e-24286330145
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 
                     Rea+++RY+eKrk+R+F+K+irY+sRKa+Ae+RpR+KGrF+k++e
  XP_010928631.1 286 REARVMRYREKRKNRRFDKTIRYASRKAYAETRPRIKGRFAKRSE 330
                     9*****************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.2961562IPR000315B-box-type zinc finger
SMARTSM003361.1E-131562IPR000315B-box-type zinc finger
CDDcd000212.38E-81862No hitNo description
PfamPF006431.6E-61859IPR000315B-box-type zinc finger
PROSITE profilePS5011910.77958105IPR000315B-box-type zinc finger
PfamPF006435.9E-760105IPR000315B-box-type zinc finger
CDDcd000217.00E-961105No hitNo description
SMARTSM003361.4E-963105IPR000315B-box-type zinc finger
PROSITE profilePS5101716.926286328IPR010402CCT domain
PfamPF062033.2E-18286328IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MASETGGGKG GYWGLAARRC DSCKGSPALL FCRADTAYLC GTCDARVHGA NKLASRHERV  60
WMCAVCEQAP ASVTCKADAA ALCVSCDADI HSANPLARRH ERVPVIPFLE PVASALKSTA  120
AAGGGGGFLF KGADDCDEEN EAEAASWLLP DPIPPNPTLK AGTMEAPELK AADYFFSDVD  180
PYLDLDYASS MDARFRQTDS VVPVHAKAVG GTPPPPLLAP DSGDFTRSKP SYSSYTAHSL  240
SHSVSSSEVG VVPDGSCGGG VGAMADVTNP YGGAGRAGNP AAQMDREARV MRYREKRKNR  300
RFDKTIRYAS RKAYAETRPR IKGRFAKRSE IEAEVDRMYS AAAAAVLMVD HGYGVVPSF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010928631.10.0zinc finger protein CONSTANS-LIKE 4
TrEMBLA0A2H3XWR60.0A0A2H3XWR6_PHODC; zinc finger protein CONSTANS-LIKE 4
STRINGXP_008789696.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21913272
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.12e-85CONSTANS-like 4