PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010928471.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 453aa    MW: 48944.7 Da    PI: 7.9491
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010928471.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.2e-12380425655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri +++ +L+el+P+     +k  + a++L +Av+YIk+Lq
  XP_010928471.1 380 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVDYIKDLQ 425
                     689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.25374424IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-16377437IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.45E-13378429No hitNo description
Gene3DG3DSA:4.10.280.101.4E-15379437IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-13380430IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-9380425IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MMFGSPPTAA AKDLNAPYLP VAAAFNHRKE ESDILHGHHH HQQQQQQMSS SLLRYRSAPS  60
SLFGEVCEDF LPVRPSSLET ETMFARLLAP DPRDEIQDKP ASAAGGQRSP HFTPSAPSVA  120
MEHGGAEELA GQQNAGFSAS QLLYHSQQQQ QQLPSPNSVE SSYRVVSSMA MEAEQMKTAA  180
GATVGGGGGH CSNLIRHSSS PAGLFSHLHV ENGYAMMRGM TGFRNGNGSM GDGTNRLKGQ  240
ISFSSRQNSS PGLMSQISEI GSEGMGGRSP EESNLGVGNG GGRGYIPGFP VASWDDSPLL  300
SDSYSGLKRA REAEGKLIAG LDQSNPQNEE IRNHVSGLTH HFSLPKTSSE MAAIEKFIQF  360
QDAVPCKIRA KRGCATHPRS IAERVRRTRI SERMRKLQEL VPNMDKQTNT ADMLDLAVDY  420
IKDLQKQVKA LSESRASCTC SASKQKPYPN PAV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010928471.10.0transcription factor bHLH130
TrEMBLA0A2H3X0N70.0A0A2H3X0N7_PHODC; transcription factor bHLH130-like
STRINGXP_008776552.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188438103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.11e-76bHLH family protein