PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010928439.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB_related
Protein Properties Length: 699aa    MW: 74532.4 Da    PI: 9.8748
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010928439.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.23e-111161347
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqky 47
                      W t+E++ll +av+++G+++W+++a +++        +t+ +c+ r++++
   XP_010928439.1 11 IWGTWEELLLSCAVNRHGTRSWDSVAMEVQarspfaHVLTPQSCRQRYRDL 61
                     6***********************************779*********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.272462IPR017877Myb-like domain
SMARTSM007171.9E-6864IPR001005SANT/Myb domain
SuperFamilySSF466898.97E-6864IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.7E-5961IPR009057Homeodomain-like
PfamPF002492.4E-101261IPR001005SANT/Myb domain
CDDcd001671.03E-61261No hitNo description
SMARTSM002974.9E-1097426IPR001487Bromodomain
Gene3DG3DSA:1.20.920.101.6E-12318424IPR001487Bromodomain
SuperFamilySSF473707.85E-14320423IPR001487Bromodomain
CDDcd043698.01E-14327420No hitNo description
PROSITE profilePS5001410.056335407IPR001487Bromodomain
PfamPF004395.3E-8336410IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 699 aa     Download sequence    Send to blast
MARSGDPERE IWGTWEELLL SCAVNRHGTR SWDSVAMEVQ ARSPFAHVLT PQSCRQRYRD  60
LQRRFAAGID GHGGDDDDGS AATGGDDSAA AEVPWLEELR KLRVAELRRE VERYDLSIGS  120
LQLKVKKLKE ERERSLRETG SGEREDDPKD DETKDSGSPA STPGSLAGDW ISGGDPGRSC  180
NESNSTDPKE EDGKAGGEDG EPEEEPGSCG GEADPVAGGA EKASGEGSYN GSSDTIAKGA  240
AAAAAADLPR QQRGESGESV AESKGGEAEA EGEKESSDVQ SSATLSRRRK GRRRKATSGS  300
SGGGGDGQEA DEDSLIAKRI AAESQPLVSF LEIIRSNKYG SVFERRLESQ ETGRYRSVIR  360
QHVDLEMVRA KMERGGGRAY TSVEFFRDLL LLCNNAIVFY PKHSPESTAA VHLRQLVKEM  420
AATTRKPDQP PYAVESAPPS LPPPHEPKFK KDPDLAGSLF EKSASPTPII ACRKRSSIST  480
KVKKEERDEK PDSDRKEREN EEQNLSAKKN NNKERSATRG LRTNKNRGGN RAGGGGGAAA  540
AAKSLNSVPT PSHKSKLVEI TAAEQAVKAD KKSGGGAAAA SKRSAVSFLN RMKRSSPSPN  600
GTLLEKLKGA SSGSSGRAAE QKKGVKVDGR KGQSSRQGGG SNHSKKAPEP SAPAKRSVGR  660
PPKRAAAPPT PPPAKKAREE VEAAPAKPPL ASSRKRGRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010928439.10.0uncharacterized protein LOC105050205
TrEMBLA0A2H3YI610.0A0A2H3YI61_PHODC; uncharacterized protein LOC103713891
STRINGXP_008799167.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31812648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.13e-31DNA-binding bromodomain-containing protein