PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010928414.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 420aa MW: 46019.8 Da PI: 7.6041 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.8 | 1.3e-11 | 50 | 75 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C +++rtG+C yG++C+++H+ XP_010928414.1 50 PGEPNCIYYLRTGYCGYGSNCRYNHP 75 5789*********************9 PP | |||||||
2 | zf-CCCH | 37.7 | 3.3e-12 | 93 | 118 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+ff++tGtCk+G++Ck++H++ XP_010928414.1 93 GQPDCQFFLKTGTCKFGATCKYHHPR 118 6899********************96 PP | |||||||
3 | zf-CCCH | 36.2 | 1e-11 | 141 | 163 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C+++++tG Ck+G CkF+H++ XP_010928414.1 141 SCPYYMKTGLCKFGIACKFNHPQ 163 6********************97 PP | |||||||
4 | zf-CCCH | 40.4 | 4.8e-13 | 280 | 305 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG Ck+G +CkF+H++ XP_010928414.1 280 DQPECQYYMKTGSCKFGTSCKFHHPK 305 689*********************96 PP | |||||||
5 | zf-CCCH | 35 | 2.4e-11 | 324 | 350 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C f++ +G CkyG++CkF H++ XP_010928414.1 324 PGQPVCTFYSMYGSCKYGSTCKFDHPF 350 5789*********************95 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.582 | 49 | 77 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.8E-5 | 49 | 76 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.9E-9 | 51 | 75 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.59E-6 | 54 | 75 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-4 | 55 | 74 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.741 | 91 | 119 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.9E-7 | 91 | 118 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-9 | 93 | 118 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.97E-6 | 96 | 121 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.3E-5 | 97 | 119 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.01E-6 | 135 | 165 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.835 | 136 | 164 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.6E-4 | 138 | 163 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.6E-9 | 140 | 163 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.1E-4 | 141 | 162 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.2E-5 | 278 | 305 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.042 | 278 | 306 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.2E-10 | 280 | 305 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-6 | 281 | 306 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.3E-5 | 284 | 305 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.16E-6 | 322 | 349 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.0E-6 | 323 | 350 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.474 | 323 | 351 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.1E-8 | 325 | 350 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.4E-4 | 328 | 348 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 420 aa Download sequence Send to blast |
MPDTRPVQSN AVANSSDACT DNLEEAMWQL KVEDCKGGAG AFPNLYPDRP GEPNCIYYLR 60 TGYCGYGSNC RYNHPTYIGQ GTLYSGELPE RDGQPDCQFF LKTGTCKFGA TCKYHHPRDK 120 HEARPVQLNF LGLPMRKEEK SCPYYMKTGL CKFGIACKFN HPQPTHHAAM LPVTGPSTNG 180 STGSSVATPS GQPLVAGLSA WSLSTIACTS NPRMQGLPYM SLVLPLTQGT MPVQHGWSMY 240 MGGVNHVPST DVVGPNQISN PKHPALLGSS TPVNFPERPD QPECQYYMKT GSCKFGTSCK 300 FHHPKERNQE AICTIGPLGL PLRPGQPVCT FYSMYGSCKY GSTCKFDHPF MGYYNYSLPA 360 LSVPDPPVLF PKTVRLPDQH VKYETGDEPQ DSNDHNHGNP STQASPSHTA HSESPGKYSD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010928414.1 | 0.0 | zinc finger CCCH domain-containing protein 3 | ||||
Swissprot | Q9SWF9 | 2e-93 | ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like | ||||
TrEMBL | A0A2H3YIW8 | 0.0 | A0A2H3YIW8_PHODC; zinc finger CCCH domain-containing protein 66-like isoform X1 | ||||
STRING | XP_008799408.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1153 | 38 | 132 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G04990.2 | 5e-85 | C3H family protein |