PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010928389.1
Common NameSREBP
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 372aa    MW: 40387.7 Da    PI: 8.9999
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010928389.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding635.8e-201661147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEde l ++v+++G+++W++I++ ++ gR++k+c++rw + 
   XP_010928389.1 16 KGPWSPEEDEALQKLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 61
                     79******************************.***********985 PP
2Myb_DNA-binding54.82.1e-1770112347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T+eEde +++a++++G++ W+tIar +  gRt++ +k++w++ 
   XP_010928389.1  70 PFTAEEDETIIRAHRRFGNK-WATIARLLS-GRTDNAIKNHWNST 112
                      89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.0661166IPR017930Myb domain
SuperFamilySSF466891.25E-3213109IPR009057Homeodomain-like
SMARTSM007176.4E-181564IPR001005SANT/Myb domain
PfamPF002491.8E-191661IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.2E-271769IPR009057Homeodomain-like
CDDcd001678.15E-171860No hitNo description
SMARTSM007177.6E-1567115IPR001005SANT/Myb domain
PROSITE profilePS5129420.61368117IPR017930Myb domain
CDDcd001675.08E-1270113No hitNo description
Gene3DG3DSA:1.10.10.603.0E-2370116IPR009057Homeodomain-like
PfamPF002492.1E-1470112IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MAASISNRGK DMDRIKGPWS PEEDEALQKL VQKHGPRNWS LISKSIPGRS GKSCRLRWCN  60
QLSPQVEHRP FTAEEDETII RAHRRFGNKW ATIARLLSGR TDNAIKNHWN STLKRKYSSA  120
TVAPAVDDVG LPHQQYDAAL VAADDAAVRP LKRSSSVGPI LSSAGGLCLS PGSPSGSDLS  180
DSSRHSHPMF SPAAAAAVLP SASHIYRPVP RTGGIVRPAS SPHHHEATVV AAPAINTKND  240
DPVTSLSLSL PGSDKPEASD LHRTNQNQLH LLAAPLSPGQ AMPLHPPTPV AHPPPPMACP  300
STADEQRREP DEERRPAFPF SAEFLAVMQE MIRNEVRSYM SGLEQSGMMC MQPPQESIHN  360
AVIKRIGITK IE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-41151163104C-Myb DNA-Binding Domain
1msf_C2e-41151163104C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00476DAPTransfer from AT4G37260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010928389.10.0transcription factor MYB44
TrEMBLK0A2240.0K0A224_ELAGV; Sucrose responsive element-binding protein
STRINGXP_008799576.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78938154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.12e-69myb domain protein r1