PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010928259.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family TALE
Protein Properties Length: 456aa    MW: 49279.8 Da    PI: 6.2329
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010928259.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.42.2e-074054382154
                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     k +yp+++++++L +++gL+ +q+ +WF N+R +
  XP_010928259.1 405 KWPYPTEDDKARLVEETGLQLKQINNWFINQRKR 438
                     569*****************************87 PP
2ELK28.73e-10359380122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELKh+L+++Y+++++++++E++
  XP_010928259.1 359 ELKHELKQGYKEKIVDIREEIL 380
                     9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012555.5E-20192236IPR005540KNOX1
PfamPF037901.3E-17194235IPR005540KNOX1
SMARTSM012567.1E-27247302IPR005541KNOX2
PfamPF037919.2E-20251301IPR005541KNOX2
SMARTSM011886.1E-4359380IPR005539ELK domain
PROSITE profilePS512139.969359379IPR005539ELK domain
PfamPF037891.1E-6359380IPR005539ELK domain
PROSITE profilePS5007111.499379442IPR001356Homeobox domain
SMARTSM003896.1E-11381446IPR001356Homeobox domain
SuperFamilySSF466899.84E-16381445IPR009057Homeodomain-like
CDDcd000867.64E-12382443No hitNo description
Gene3DG3DSA:1.10.10.602.7E-24386443IPR009057Homeodomain-like
PfamPF059201.4E-17399438IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MAFPNHLSHE MGLPQYSDKH LGEGPVVLRT MNQHGGQHSS SSDAKDGKDL HRLMAEASGK  60
PSLAAGGRGG GGPTWLNSAI LRQQGHHYVD GSFLHLQSTS DSSASPAGGA AASSGGGGQW  120
LPRPAILQRS GSDEEVPVSS DSMIAAAIST DAGGSGQQTH GGGELGEGET GLQGPAGGGA  180
VEQVGEGSWQ STRYKAEILS HPLYDQLLSA HVACLRIATP VDQLPRIDAQ LAQSQNVVAK  240
YSVLGPGNQM LGDNKELDQF MTHYVLLLCS FKEQLQQHVR VHAMEAVMAC WELEQSLQSL  300
TGVSPGEGTG ATMSDDDDDQ ADSETNLFDG SLDGPDSMGF GPLIPTESER SLMERVRQEL  360
KHELKQGYKE KIVDIREEIL RKRRAGKLPG DTTSALKAWW QAHSKWPYPT EDDKARLVEE  420
TGLQLKQINN WFINQRKRNW HSNPSSSISL KSKRKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A8e-13382446872Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16571GGRGGGG
2435455RKRNWHSNPSSSISLKSKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010928258.10.0homeobox protein knotted-1-like 13 isoform X1
SwissprotP480001e-180KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A2H3XUK00.0A0A2H3XUK0_PHODC; homeobox protein knotted-1-like 13 isoform X2
STRINGXP_008788774.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-162KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]