PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010928088.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | NF-YB | ||||||||
Protein Properties | Length: 249aa MW: 27105.5 Da PI: 7.06 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 171.1 | 1.2e-53 | 56 | 151 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 reqdrf+Pianv+rim+kvlP +akis+daket+qecvsefisf+t+ea+++cqre+rkti+++d++wa+++lGf+dyv+pl+ yl++yreleg+ XP_010928088.1 56 REQDRFMPIANVIRIMRKVLPLHAKISDDAKETIQECVSEFISFITGEANERCQREHRKTITAEDVIWAMGKLGFDDYVAPLSRYLQRYRELEGD 150 89********************************************************************************************9 PP NF-YB 97 k 97 + XP_010928088.1 151 Q 151 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 4.5E-49 | 52 | 153 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 9.01E-38 | 58 | 153 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.9E-25 | 61 | 125 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 4.5E-15 | 89 | 107 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 92 | 108 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 4.5E-15 | 108 | 126 | No hit | No description |
PRINTS | PR00615 | 4.5E-15 | 127 | 145 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MARPFASGVN SSQAGPAGGV DADQSGPTAG NPVLPGSTAR ATATSSTTQP QVGNLREQDR 60 FMPIANVIRI MRKVLPLHAK ISDDAKETIQ ECVSEFISFI TGEANERCQR EHRKTITAED 120 VIWAMGKLGF DDYVAPLSRY LQRYRELEGD QRAGLRGEHF PIIKQRRHPQ ISDTGRATDV 180 GAQPLSMRSP PPQAPPPSNL VMPPIVPPPR VNHLFGEDPR AGYFLEMYWG GDGSGSSNSG 240 APPMPDFFQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 1e-55 | 54 | 146 | 5 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010928085.1 | 0.0 | nuclear transcription factor Y subunit B-2 isoform X1 | ||||
Refseq | XP_010928086.1 | 0.0 | nuclear transcription factor Y subunit B-2 isoform X2 | ||||
Refseq | XP_010928087.1 | 0.0 | nuclear transcription factor Y subunit B-2 isoform X2 | ||||
TrEMBL | A0A2H3YXS8 | 1e-138 | A0A2H3YXS8_PHODC; nuclear transcription factor Y subunit B-10 | ||||
STRING | XP_008805507.1 | 1e-139 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47670.2 | 5e-58 | nuclear factor Y, subunit B6 |