PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010928060.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family CO-like
Protein Properties Length: 392aa    MW: 43054 Da    PI: 4.6824
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010928060.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.12.8e-06434535
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHk 35
                     C+ + e++   +C+++   lC +C l+ H+
  XP_010928060.1  4 LCDFCREQRSMVYCRSDAASLCLSCDLNVHS 34
                    7***************************995 PP
2zf-B_box20.31.1e-064687441
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg....Htvvp 41
                      C+++ +++++  C + ++ lC++C  ++H g    H+ ++
  XP_010928060.1 46 LLCDRCISQPAIVRCIEENVSLCQNCDWNGHGGsascHKKQT 87
                    57*****************************66999998765 PP
3CCT63.75.6e-22340383144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     R+ a++RYkeK+k RkFeKkirYesRKa+A+ R RvKGrFvk+ 
  XP_010928060.1 340 RDSAVMRYKEKKKARKFEKKIRYESRKARADVRRRVKGRFVKAG 383
                     899**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.741147IPR000315B-box-type zinc finger
SMARTSM003366.0E-10147IPR000315B-box-type zinc finger
CDDcd000213.01E-7447No hitNo description
CDDcd000210.002474778No hitNo description
PROSITE profilePS5101715.487340382IPR010402CCT domain
PfamPF062031.0E-16340382IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MGSLCDFCRE QRSMVYCRSD AASLCLSCDL NVHSANALSR RHFRSLLCDR CISQPAIVRC  60
IEENVSLCQN CDWNGHGGSA SCHKKQTING YSGCPSTAEL SRIWSFVLEF PPMVDSNCEQ  120
GMGLMSINDN SVSNTGKMDD MESANKLNPW IGSSSISAVN PMVCTADQPA GSVDSTTHKL  180
YSTGTKDLIC KDDFYDDFNM DDVDLTFENY EELFGASHSN AEQLFDDAGI DSFFELNEIP  240
AVNSNCQGEF VAEAESMQAA FSNAVSADSV MSNPGSKADP NPYFPARQAW SGLSLSFSGL  300
TGESSAGDCQ DCGMSSMLFM GEPPWCPTGP ESSSYTPASR DSAVMRYKEK KKARKFEKKI  360
RYESRKARAD VRRRVKGRFV KAGEAYDYDP LC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019707669.10.0zinc finger protein CONSTANS-LIKE 9 isoform X2
SwissprotQ9LUA91e-123COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLA0A2H3YL690.0A0A2H3YL69_PHODC; zinc finger protein CONSTANS-LIKE 10-like isoform X2
STRINGXP_008800276.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20793788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.18e-88B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]