PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010927922.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | LBD | ||||||||
Protein Properties | Length: 249aa MW: 25961.3 Da PI: 8.3854 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 139 | 1.6e-43 | 25 | 124 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC++dCv+apyfp +qp+kf vh++FGasnv+kll++l++ +reda++sl+yeA++r+rdPvyG+vgvi+ lq++l+ql+ +l+ XP_010927922.1 25 PCAACKFLRRKCQPDCVFAPYFPPDQPQKFVHVHRVFGASNVTKLLNELHPYQREDAVNSLAYEADMRLRDPVYGCVGVISILQHRLRQLQMDLS 119 7*********************************************************************************************9 PP DUF260 96 llkee 100 +++e XP_010927922.1 120 CARAE 124 99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.766 | 24 | 125 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.1E-43 | 25 | 122 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MASSSAPVPA SSSAAAALST STSSPCAACK FLRRKCQPDC VFAPYFPPDQ PQKFVHVHRV 60 FGASNVTKLL NELHPYQRED AVNSLAYEAD MRLRDPVYGC VGVISILQHR LRQLQMDLSC 120 ARAELSKYQS AAAAAGGPSA ANFSSGLATA GGHGYVNANH PIGVGSIVLG REQFFPVAAT 180 AAREPHPHHH AMMRNHEGEL VARLGANGAY DAGLVAAMNA SAVSIGPLGG QFMKPSAAGG 240 DERPSVGPS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-52 | 15 | 128 | 1 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-52 | 15 | 128 | 1 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes the switch from proliferation to differentiation in the embryo sac. Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation. Interacts directly with RS2 (rough sheath 2) to repress some knox homeobox genes. {ECO:0000269|PubMed:17209126}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010927922.1 | 0.0 | LOB domain-containing protein 6 | ||||
Swissprot | Q32SG3 | 1e-84 | LBD6_MAIZE; LOB domain-containing protein 6 | ||||
TrEMBL | A0A2H3Z1W9 | 1e-141 | A0A2H3Z1W9_PHODC; LOB domain-containing protein 6 | ||||
STRING | XP_008807271.1 | 1e-142 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2267 | 38 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65620.4 | 2e-59 | LBD family protein |