PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010927809.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | Whirly | ||||||||
Protein Properties | Length: 241aa MW: 27088.2 Da PI: 10.1864 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 192.6 | 6.1e-60 | 64 | 201 | 2 | 139 |
Whirly 2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkv 96 ++k+ka+l v +v+ptf+ ldsg+ k++r+G ++l++++a+++rkyd ekkq falsate++ l++l++ esceffhdp++k+s eG+v+k+l+v XP_010927809.1 64 IFKGKASLAVSPVLPTFSRLDSGSSKVDRRGVVMLKFMPAIGQRKYDSEKKQLFALSATEIGCLISLGPAESCEFFHDPSMKSSLEGQVQKTLSV 158 9********************************************************************************************** PP Whirly 97 ePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139 Pl++G G+f+nl+v ns++k+n++fsvPv+kaefav+r +++ XP_010927809.1 159 SPLTNGEGYFFNLAVMNSVQKTNDRFSVPVTKAEFAVMRAAFS 201 ***************************************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 1.3E-69 | 52 | 216 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 1.1E-61 | 55 | 239 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 1.5E-56 | 64 | 198 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MMKLSRFWLP RNQLASKFLP VKNSNIKETS WFSNYSSRLG ISTARSDSIK HGNYSGKTYA 60 DFCIFKGKAS LAVSPVLPTF SRLDSGSSKV DRRGVVMLKF MPAIGQRKYD SEKKQLFALS 120 ATEIGCLISL GPAESCEFFH DPSMKSSLEG QVQKTLSVSP LTNGEGYFFN LAVMNSVQKT 180 NDRFSVPVTK AEFAVMRAAF SFVLPYIMGW DQVIKPKLES IGVERPMQRE MRADPDFEWG 240 R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3n1h_A | 1e-73 | 52 | 219 | 5 | 172 | StWhy2 |
3n1i_A | 1e-73 | 52 | 219 | 5 | 172 | protein StWhy2 |
3n1j_A | 1e-73 | 52 | 219 | 5 | 172 | Protein StWhy2 |
3n1k_A | 1e-73 | 52 | 219 | 5 | 172 | protein StWhy2 |
3n1l_A | 1e-73 | 52 | 219 | 5 | 172 | protein StWhy2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010927809.1 | 1e-180 | single-stranded DNA-binding protein WHY2, mitochondrial | ||||
Swissprot | D9J034 | 5e-81 | WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial | ||||
TrEMBL | A0A2H3YU05 | 1e-160 | A0A2H3YU05_PHODC; single-stranded DNA-binding protein WHY2, mitochondrial-like | ||||
STRING | XP_008803798.1 | 1e-161 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3012 | 38 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71260.1 | 3e-74 | WHIRLY 2 |