PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010927780.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family Trihelix
Protein Properties Length: 322aa    MW: 35707.6 Da    PI: 4.8123
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010927780.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix72.86.2e-2330108173
        trihelix   1 rWtkqevlaLiearremeerlrrgk.....lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.ts 73 
                     rWt++e+l+Li+++r +e r rr++       +p+W++v++++r++g+ r++ qC+++w+nl+ +++ki+++ek+  ++
  XP_010927780.1  30 RWTRHEILVLIQGKRVVEGRGRRRAqgaamVVEPKWAAVASYCRRHGMDRGALQCRKRWSNLACDFRKIRAWEKGPgAA 108
                     8*********************96534444679****************************************985233 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.4233092IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.8E-43091IPR009057Homeodomain-like
PfamPF138371.9E-1030116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MASAVSTAVA QSREESGGGG SAARSHRLPR WTRHEILVLI QGKRVVEGRG RRRAQGAAMV  60
VEPKWAAVAS YCRRHGMDRG ALQCRKRWSN LACDFRKIRA WEKGPGAAEG ESFWAMRNDR  120
RRERGLPGFF DRAVYEILDG AVEVEVEAEG EEGAAAVEED EGKKASALAE EENGEEEEEA  180
IFDSGRTAAD DGLFSDFEQE EAEEDERPQA MVVVPISERM YEPFSQESSD PEMVNDKQPN  240
DGKEMGSSPR GQKRKRTSKE GAGDTNKLIE VLERNSKILT AQLEAQNINC QLDRDQRKDQ  300
ANSLLGVLNK LADALGRIAD KL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029121842.10.0trihelix transcription factor ASR3
TrEMBLA0A2H3XYK01e-148A0A2H3XYK0_PHODC; trihelix transcription factor ASR3-like
STRINGXP_008790688.11e-149(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39152648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.11e-62Trihelix family protein