PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010927769.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ARF
Protein Properties Length: 879aa    MW: 98627.2 Da    PI: 6.9382
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010927769.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.84.3e-23154255199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++ +++a+e+       +++++ ++l+ +d++g +W++++i+r++++r++l++GW+ Fv++++L +gD ++F   + ++
  XP_010927769.1 154 FCKTLTASDTSTHGGFSVLRRHADEClppldmRLQPPT-QELVARDLHGVEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGEN 245
                     99*****************************9667665.49************************************************..4499 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     +el+v+v+r+
  XP_010927769.1 246 GELRVGVRRA 255
                     99*****996 PP

2Auxin_resp115.54.7e-38280362183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha++t+++F+v+Y+Pr+s+ eF+v++++++++lk ++s+GmRfkm+fe+e+++e+r++Gt+vg+ d+d+v Wp SkWr+L+
  XP_010927769.1 280 AWHAVTTGTMFTVYYKPRTSPCEFIVPYDRYMESLKDNYSIGMRFKMRFEGEEAPEQRFTGTIVGIGDVDSVCWPASKWRCLQ 362
                     89********************************************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.02E-41147283IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.8E-41147269IPR015300DNA-binding pseudobarrel domain
CDDcd100172.13E-21152254No hitNo description
PROSITE profilePS5086311.744154256IPR003340B3 DNA binding domain
SMARTSM010194.0E-23154256IPR003340B3 DNA binding domain
PfamPF023625.7E-21154255IPR003340B3 DNA binding domain
PfamPF065071.1E-35280362IPR010525Auxin response factor
PfamPF023091.3E-8750838IPR033389AUX/IAA domain
PROSITE profilePS5174523.318753835IPR000270PB1 domain
SuperFamilySSF542775.4E-12757830No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 879 aa     Download sequence    Send to blast
MASSEVTTRG NGSNGRGESF STVCSESGAD AARTPSSAAP RRDAEDSLYT ELWLACAGPL  60
VTIPRVGERV FYFPQGHIEQ VEASTNQLAE KQVKIYDLPS KILCRVINIQ LKAEQETDEV  120
FAQVTLLPEA NQDENALEKE NLPSPPPRPH VHSFCKTLTA SDTSTHGGFS VLRRHADECL  180
PPLDMRLQPP TQELVARDLH GVEWRFRHIF RGQPRRHLLQ SGWSVFVSSK RLVAGDAFIF  240
LRGENGELRV GVRRAMRQQT NVPSSVISSH SMHLGVLATA WHAVTTGTMF TVYYKPRTSP  300
CEFIVPYDRY MESLKDNYSI GMRFKMRFEG EEAPEQRFTG TIVGIGDVDS VCWPASKWRC  360
LQVRWDETSS IPRPQRVSPW NIEPALNPPL NPLPTPKTKR PRPNAMPLSP DSSVLTKEVA  420
IKVTADPSQI HGVSRILQGQ DRMTLRNNLS DSNDSDTVQK PLMWPSSLDE DKNDVVSSRR  480
RLGSGNWMQM SGHEPTYKDM RSGFRPFSDM HGFGKPSFEQ ISTSTDPLKN HFEDQEGKLN  540
LLLDPYSLIP SKCSFNKEST FKKPPHAGEL PYQSAENVTY GGLEDFSLVQ GHSIEQNPPN  600
WLAHPQSTFQ SENRAHKRAV MPQPLEAAQN EITRPKESGN CKLFGFHLNS NPTKSDHVMR  660
SEHSMPQMKS DHIMRSEHLM PQTNATNNLV SQTQPTVAQD ESQTLEVDHH SKLPRGTKSV  720
TTAPAATEHE MHHQHCPETM KEVLSKLPGG SSRSCRKVHK QGIALGRSVD LTKFNGYDEL  780
IAELDQMFEF EGELTAPNNN WLIVYTDNEG DMMLVGDDPW LEFCSMVCKI YIYTREEVQK  840
MKPGTLNPRV EGIPTVMRGN ATAKVTKVLF PTSTANPEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-173313842354Auxin response factor 1
4ldw_A1e-173313842354Auxin response factor 1
4ldw_B1e-173313842354Auxin response factor 1
4ldx_A1e-173313842354Auxin response factor 1
4ldx_B1e-173313842354Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1398402KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs) (By similarity). Could act as transcriptional activator or repressor (PubMed:26959229, PubMed:26716451, PubMed:27645097, PubMed:28167023). Involved in the control of fruit ripening process (PubMed:26959229, PubMed:26716451, PubMed:28167023). Regulates expression of a number of ripening regulators, transcription factors, and ethylene biosynthesis and signaling components (PubMed:26959229, PubMed:26716451). May act as a transcriptional repressor of auxin-responsive genes (PubMed:26716451). Regulates vegetative growth, lateral root formation and flower organ senescence, possibly partially by regulating gene expression of auxin and ethylene response factor (ERF) genes (PubMed:28167023). Plays a negative role in axillary shoot meristem formation (PubMed:27645097). {ECO:0000255|RuleBase:RU004561, ECO:0000269|PubMed:26716451, ECO:0000269|PubMed:26959229, ECO:0000269|PubMed:27645097, ECO:0000269|PubMed:28167023}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By tomato fruit ripening. Expression in tomato fruits is up-regulated by exogenous application of ethylene and down-regulated by inhibition of ethylene receptors with 1-methylcyclopropene (1-MCP) (PubMed:26959229, PubMed:26716451). Up-regulated by plant hormone abscisic acid (ABA) in tomato fruits (PubMed:26959229). Expression is not up-regulated by plant hormone auxin in tomato fruits (PubMed:26716451). Up-regulated by auxin and gibberellic acid (GA), and down-regulated by ethylene in seedlings (PubMed:28167023). Down-regulated during decapitation-induced axillary shoot development and by excision of immature leaves. Down-regulation is inhibited by the application of auxin on the cut surface (PubMed:27645097). {ECO:0000269|PubMed:26716451, ECO:0000269|PubMed:26959229, ECO:0000269|PubMed:27645097, ECO:0000269|PubMed:28167023}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010927768.10.0auxin response factor 2A isoform X4
SwissprotQ2LAJ30.0ARF2A_SOLLC; Auxin response factor 2A
TrEMBLA0A2H3XYI40.0A0A2H3XYI4_PHODC; Auxin response factor
STRINGXP_008790696.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0auxin response factor 2
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Breitel DA, et al.
    AUXIN RESPONSE FACTOR 2 Intersects Hormonal Signals in the Regulation of Tomato Fruit Ripening.
    PLoS Genet., 2016. 12(3): p. e1005903
    [PMID:26959229]
  3. Xu T, et al.
    SlARF2a plays a negative role in mediating axillary shoot formation.
    Sci Rep, 2016. 6: p. 33728
    [PMID:27645097]
  4. Ren Z,Liu R,Gu W,Dong X
    The Solanum lycopersicum auxin response factor SlARF2 participates in regulating lateral root formation and flower organ senescence.
    Plant Sci., 2017. 256: p. 103-111
    [PMID:28167023]