PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010927521.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ARR-B
Protein Properties Length: 672aa    MW: 74007.5 Da    PI: 6.0422
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010927521.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.71.1e-27207260155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kpr++W+ +LH +Fv av+qL G++kA+Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  XP_010927521.1 207 KPRVVWSVDLHGKFVAAVNQL-GIDKAVPKKILDLMNVENLTRENVASHLQKYRL 260
                     79*******************.********************************8 PP
2Response_reg78.13.1e-26261341109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl vdD+p+ ++ll+++l + +y +v+++++++ alell+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+v+a+g+ + + + +  G
  XP_010927521.1  26 VLAVDDDPTCLKLLENLLLRCQY-NVTTTTKATVALELLRENKdkFDLVVSDVHMPDMDGFKLLELVGL-EMDLPVIMVSANGDTKAVMKGITHG 118
                     799********************.***************888889*******************87754.558********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l Kp+ +ee+ +
  XP_010927521.1 119 ACDYLLKPIRIEEVKN 134
                     ***********99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363922.4E-1644671IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23001.7E-4023147No hitNo description
SuperFamilySSF521723.98E-3423147IPR011006CheY-like superfamily
SMARTSM004482.2E-3024136IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011041.61925140IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.2E-2326134IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.17E-1860139No hitNo description
Gene3DG3DSA:3.40.50.23001.7E-40181190No hitNo description
Gene3DG3DSA:1.10.10.601.1E-29204265IPR009057Homeodomain-like
PROSITE profilePS5129410.605204263IPR017930Myb domain
SuperFamilySSF466896.45E-19205264IPR009057Homeodomain-like
TIGRFAMsTIGR015576.1E-24207260IPR006447Myb domain, plants
PfamPF002491.4E-5209259IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MTEEEGRRSM EKEGEATDEF PVGMRVLAVD DDPTCLKLLE NLLLRCQYNV TTTTKATVAL  60
ELLRENKDKF DLVVSDVHMP DMDGFKLLEL VGLEMDLPVI MVSANGDTKA VMKGITHGAC  120
DYLLKPIRIE EVKNIWQHVV RRRKFDTRYH NNVEDGPRAQ IPNSETVQGH GDHSGKANRK  180
RKDQNEEEDE DSEENTQDHE ESSAQKKPRV VWSVDLHGKF VAAVNQLGID KAVPKKILDL  240
MNVENLTREN VASHLQKYRL YLKRLSTVAN QQTNMTVLGG RNSSYTNTSS LDGFRNFHAW  300
GGSRQLPALT SFQPNGLLGR MNSSTAFGVH SLVPSQIVQH GHAQNTSNSI NDLWKLQGTN  360
LPRNHQGNSL QGMPTSMGLD QLRRLELGQE ANNILPSSLS SSGLANGLSG NSFTNMANKP  420
FLVQANKEQT HPGGLDKYYS VRMPSSGSDP FEFPLGDSSQ FPNLVRCNTW QDALSLTDYH  480
ETTLPMCAPF SNNCSSPSNV GGSVPSTVSN MDRDICGQSS IHAAMAPMHG SLIGNDVHGH  540
VGSLGGSMMP VAMSAYEDPK FPDICSLDKS KQKWEEQKQN QSFNSNVIFS SSLNSSLPNL  600
HRNDPIGSQI LSSAIGNQKM DTDVIGQTVL DARDLTQHGS IDKSQCNFSS ADCSYNEPVD  660
GEWNASNNKS ST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-25203266164ARR10-B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010927521.10.0two-component response regulator ORR24
TrEMBLA0A2H3YDB30.0A0A2H3YDB3_PHODC; Two-component response regulator
STRINGXP_008796839.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81473447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-122response regulator 12