PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010927414.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ARF
Protein Properties Length: 420aa    MW: 45300 Da    PI: 6.9484
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010927414.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B381.11.1e-25118219199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f k+ltpsd+++ g +++p+ +a+++        +++   +t++++d +g +We+++iyr++++r++lt+GW++Fv+ ++L +gD+vvF+  +++
  XP_010927414.1 118 FAKILTPSDANNGGGFSVPRFCADSIfpgldfkAEPPV--QTISVRDVHGTRWEFRHIYRGTPRRHLLTTGWSKFVNCKKLVAGDSVVFM--KND 208
                     89*********************999****98544444..49************************************************..779 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                      +el+v+v+r+
  XP_010927414.1 209 AGELFVGVRRT 219
                     99******996 PP
2Auxin_resp86.84.1e-29267350183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                     a++ a+++ +Fev+Y+Pra++++Fvv  e ve+a+++ +s+G R+km++eted  + ++ +Gtv++   +d   Wp+S+Wr+L+
  XP_010927414.1 267 AVKLAEMNHPFEVLYYPRAGSPDFVVAEEVVESAMRMYWSAGVRVKMSMETEDLLRMTWfQGTVSSAAVSDVGPWPGSPWRMLQ 350
                     6788999***************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.41E-30114227IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.5E-34117221IPR015300DNA-binding pseudobarrel domain
CDDcd100171.50E-21117218No hitNo description
SMARTSM010197.9E-19118220IPR003340B3 DNA binding domain
PfamPF023622.0E-23118219IPR003340B3 DNA binding domain
PROSITE profilePS5086313.126118220IPR003340B3 DNA binding domain
PfamPF065073.2E-26267350IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MAPAADVTEL RSVDPYVWKA CAGTAAKIPA VGSRVYYFPQ GHAEQSSCQP DFSAVRCCRS  60
FVLCTVSAVR FLASPDSDEV FAQIALDPRF PPPPLVPVPA DTPDGVGGNG GGGGVVSFAK  120
ILTPSDANNG GGFSVPRFCA DSIFPGLDFK AEPPVQTISV RDVHGTRWEF RHIYRGTPRR  180
HLLTTGWSKF VNCKKLVAGD SVVFMKNDAG ELFVGVRRTG RSCGSVDYLP YSTPAGAGVK  240
LEENLGSGEG FSRNVRGRVP ASSVVEAVKL AEMNHPFEVL YYPRAGSPDF VVAEEVVESA  300
MRMYWSAGVR VKMSMETEDL LRMTWFQGTV SSAAVSDVGP WPGSPWRMLQ ETDRTDFFLL  360
ASVSVSGSAS FAVPFNQKMG MKQTLVLLLS PLLLLLSCFC PSELGIGMTI PCWLLCLLPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A5e-641335051367Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010927413.10.0auxin response factor 17
RefseqXP_029121698.10.0auxin response factor 17
SwissprotQ84WU61e-114ARFQ_ARATH; Auxin response factor 17
TrEMBLA0A2H3Y6H90.0A0A2H3Y6H9_PHODC; Auxin response factor
STRINGXP_008793917.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-114auxin response factor 17
Publications ? help Back to Top
  1. Shi ZH, et al.
    Overexpression of AtTTP affects ARF17 expression and leads to male sterility in Arabidopsis.
    PLoS ONE, 2015. 10(3): p. e0117317
    [PMID:25822980]
  2. de Lucas M, et al.
    Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation.
    Plant Cell, 2016. 28(10): p. 2616-2631
    [PMID:27650334]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Wang B, et al.
    Fine regulation of ARF17 for anther development and pollen formation.
    BMC Plant Biol., 2017. 17(1): p. 243
    [PMID:29258431]
  5. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  6. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]