PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010927333.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family HB-other
Protein Properties Length: 1252aa    MW: 141593 Da    PI: 8.3885
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010927333.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox41.72e-131263657
                    S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
        Homeobox  6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                    + t++ql+ Le+++ +++yp++++ ee A++l+Lt +q+++WF  rR kek+
  XP_010927333.1 12 KKTQTQLQSLEKFYSEEKYPKQKALEEYATSLNLTYSQIRTWFVERRRKEKR 63
                    5699***********************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007114.479464IPR001356Homeobox domain
SMARTSM003892.5E-10668IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.7E-13969IPR009057Homeodomain-like
SuperFamilySSF466893.25E-121069IPR009057Homeodomain-like
PfamPF000468.2E-111263IPR001356Homeobox domain
CDDcd000865.40E-92165No hitNo description
SMARTSM005711.0E-7435494IPR018501DDT domain
PROSITE profilePS5082711.237435494IPR018501DDT domain
PfamPF027912.5E-8437489IPR018501DDT domain
PfamPF156121.2E-7718757IPR028942WHIM1 domain
PfamPF156132.6E-10861933IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1252 aa     Download sequence    Send to blast
MMISMQIKTT KKKTQTQLQS LEKFYSEEKY PKQKALEEYA TSLNLTYSQI RTWFVERRRK  60
EKRENEALSN SKSSESVQPE SDQSNDSALF AVDRHVGRKD KHSAPMMRRK DISGQGEIKG  120
HTLLICDELQ NPESTCLKKR FSAGYSNQLV RHKDRHNISG QQMKNSLGGR VYRAEKKHLV  180
RLQVLFSKDH ILKKVFRKDG PPLGVEFDPL PANVFGQRTG SQNLQSCRES QKSLKRRKVS  240
ESPMADPVTS HERNVPERKY GIGKGLMTVW HATNSGSGKI PTGIDFVDGS ESWMLFTSNA  300
SLKETSCQVS KGMRQRKQKE NTSRKKIQEK SKLPMRKRKV PCSKDVDQKK PYLRECKLSL  360
DESLEQSNML TVLIDDEELE LTELQAGPNP LRCSAHLASS GRHGCPLCKD LLARFPPESV  420
KMKQPFCTRP WDSSPELVKK LFKVLRFLYT HSVTIEVCPF TLDEFAQAFH DKDSLLLGKI  480
HVALLRLLLL DVEGEMTAGL IRRASKDCRF LGFLNFVREQ EFDVNLWSRS LNPLTWTEIL  540
RQVLVAAGYG SKQNALKREI FNKERNRMAK YGLRPRTLKG ELFALLSKQG TGGLKVSELA  600
RASQIVDLDL PNTTEELEQL IGLTLSSDIT LFEKIGPSAY RLRVDPHVKG KLDLLSETED  660
SGSVDDDSVD ASSSSDDSDD SEEMNSAIQE RQIVKYKAGR RKTGQKIAKC TEIDESYSGE  720
AWVLGLMEGE YSDLSIEEKL NALAALVDLV GAGSILRTKE PMRAISFIPN TRSHGSGAKI  780
KKSSSDHYLP PQASGEGLAH NVEETYSLPV SCPTDFSATF LKTSKKGQSF VNTNGYRPGG  840
PRTKNPEPMG EPGQVVHPLQ SIYLGSDRRY NSYWLFLGPC TADDPGHRRV YFESSEDGHW  900
EVIDTSQALR MLLSVLDGRG TREARLFASL EKRETCLCQA MDEYITDEIR IRQTRRSDPS  960
DLDRNSGDGS SPISDVDNIM IPAESTDNLL SASGAIILEV GRSGQDKKQK WERLQAFDKW  1020
IWSSFYSSLN AVKYRKRSYM ESLARCESCH DLYWRDEKHC KICHTTFEID FDLEERYAIH  1080
VATCREIEDT SEFPKHKVLP SQLQALKAAI HAIEAIMPEA ALANTWTSSA HKVWVKRLRR  1140
TSSLAELLQV LVDFVGAINE EWLYECASAL GSNMDLDDII VYFQTMPQTT SAVALWMVKL  1200
DSLIGPYLES VQSERRLTSM SQLKQARPVR DGLESIKIIF SMRPSQDHQD TS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15661RRRKEK
25663RRRKEKRE
3231237KSLKRRK
4323338RKKIQEKSKLPMRKRK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. May prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing. {ECO:0000250|UniProtKB:F4HY56}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019708011.10.0LOW QUALITY PROTEIN: homeobox-DDT domain protein RLT3-like
SwissprotF4JRF50.0RLT3_ARATH; Homeobox-DDT domain protein RLT3
TrEMBLA0A2H3YAK30.0A0A2H3YAK3_PHODC; homeobox-DDT domain protein RLT3-like
STRINGXP_008795938.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45563350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12750.10.0Homeodomain-like transcriptional regulator