PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010927330.1
Common NameKNOX1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family TALE
Protein Properties Length: 352aa    MW: 38976.1 Da    PI: 6.6333
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010927330.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.91.9e-092803142155
                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                     k +yps++++  LA+++gL+++q+ +WF N+R ++
  XP_010927330.1 280 KWPYPSEAQKLALAQSTGLDQKQINNWFINQRKRH 314
                     579*****************************885 PP
2ELK39.11.5e-13234255122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELK qLlrKYsgyL+sLkqEF+
  XP_010927330.1 234 ELKGQLLRKYSGYLSSLKQEFL 255
                     9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.7E-1986130IPR005540KNOX1
PfamPF037906.1E-2388127IPR005540KNOX1
SMARTSM012563.7E-24145196IPR005541KNOX2
PfamPF037912.7E-20150194IPR005541KNOX2
SMARTSM011881.4E-7234255IPR005539ELK domain
PfamPF037892.6E-10234255IPR005539ELK domain
PROSITE profilePS5121311.226234254IPR005539ELK domain
PROSITE profilePS5007112.86254317IPR001356Homeobox domain
SuperFamilySSF466891.15E-19256331IPR009057Homeodomain-like
SMARTSM003891.7E-13256321IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.8E-28259319IPR009057Homeodomain-like
CDDcd000869.24E-13266318No hitNo description
PfamPF059204.3E-17274313IPR008422Homeobox KN domain
PROSITE patternPS000270292315IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009934Biological Processregulation of meristem structural organization
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MVSQYTSRTD RQIAREMEGR SGSGGGGDNS GLMGGFSDGS GSLSPLMIMP LMASRPVLPP  60
TPHMSNNGLF LPPPLSNAAG EDYDNSVIKA KIMAHPQYPR LLSAYVNCHK VGAPPEVVAR  120
LEEACATSLM MGRASSSSAA GDGGSGGGGG EDPALDQFME AYCEMLTKYE QELSKPFKEA  180
MLFLSRIDAQ FKSLSLSTPP PPQVYGEQLE RNGSSEEEFG ASENYVDPQA EDRELKGQLL  240
RKYSGYLSSL KQEFLKKRKK GKLPKEARQQ LLDWWNRHYK WPYPSEAQKL ALAQSTGLDQ  300
KQINNWFINQ RKRHWKPSEE MQFVVMDTAH PHYFMDNSLG NPFPLDCAPA LL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1249258LKQEFLKKRK
2255259KKRKK
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010927330.10.0homeobox protein knotted-1-like LET6
SwissprotP466081e-131HSBH1_SOYBN; Homeobox protein SBH1
TrEMBLA5H2370.0A5H237_ELAGV; Class I KNOX-like 1 protein
STRINGXP_008795979.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2107357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62360.11e-116KNOX/ELK homeobox transcription factor
Publications ? help Back to Top
  1. Jouannic S,Collin M,Vidal B,Verdeil JL,Tregear JW
    A class I KNOX gene from the palm species Elaeis guineensis (Arecaceae) is associated with meristem function and a distinct mode of leaf dissection.
    New Phytol., 2007. 174(3): p. 551-68
    [PMID:17447911]
  2. Shu Y, et al.
    GmSBH1, a homeobox transcription factor gene, relates to growth and development and involves in response to high temperature and humidity stress in soybean.
    Plant Cell Rep., 2015. 34(11): p. 1927-37
    [PMID:26205508]