PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010927297.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | SBP | ||||||||
Protein Properties | Length: 1060aa MW: 116888 Da PI: 7.7751 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 129.9 | 9.5e-41 | 153 | 230 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C+adls+ak+yhrrhkvCevhsk++++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+ XP_010927297.1 153 MCQVDDCRADLSNAKDYHRRHKVCEVHSKSAKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 230 6**************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.1E-33 | 148 | 215 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.077 | 151 | 228 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.57E-37 | 152 | 231 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.2E-29 | 154 | 227 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:1.25.40.20 | 2.8E-7 | 246 | 257 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 2.8E-7 | 490 | 491 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 6.58E-8 | 806 | 944 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 5.41E-7 | 847 | 949 | No hit | No description |
Gene3D | G3DSA:1.25.40.20 | 2.8E-7 | 850 | 944 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 8.523 | 890 | 911 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50297 | 8.853 | 890 | 957 | IPR020683 | Ankyrin repeat-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1060 aa Download sequence Send to blast |
MEGQVGAQVG TPLFFHQQLP VQFHEATSSG KKRDFPWQGH HQQQRLMGAS LPNNNPSGNW 60 NPKMWAWDSF NFVAKPSVDA SDVLRAVGTD VEQRKKGEES SKGLILGKGL GEDEENLTLK 120 LGGGNYSAAE EPVARPNKRV QSGSPGSRGS YPMCQVDDCR ADLSNAKDYH RRHKVCEVHS 180 KSAKALVGKQ MQRFCQQCSR FHPLSEFDEG KRSCRRRLAG HNRRRRKTQP EDVPSQLLLS 240 RNQENAANGN LDIVNLLALL ARFQGKLASQ PPLPDRDRLI QVLSKISNLN TANSSSRLPV 300 SGGFDLNVSQ ATQQGSFEQS PKGSENPAAP STRNLLAVVS AALTASAPEA IASLSQGSSD 360 SSGNDKAKLQ CAEPATDVNS RSKPIQTFPS AGVVRTNCIS RSPIEVPEQP VHEAWPSLPL 420 QLFGPAEGDS APKMGSVIKY LSSERSNPME ESMKHARMSN CREDNATVEL STGRGWNATL 480 ELFKDPQRRL ENGAVQKHPY QAGYTSSSGS DHSPSSSNSD TQDRTGRIIF KLFGKDPSNF 540 PGTLRAQILN WLSLSPSEME SYIRPGCVVL SVYLSMPSIA WDQLEGDLLQ QVTSLVQCSE 600 SEFWRNGRFL VRTSRQLVSH KDGKIRLCKS WRTGSAPELT SVSPVAVVSG QETSLVLKGH 660 NLTVPGTKIH CTYMGKYTSK DVLCSAYPGN MCDDSSVESF DFPGGSPTVF GRCFIEVENG 720 FKGNSFPVII ADARICQELR VLESEFDEDV RIADFIPEHQ VQENGQPRSR EDALHFLNEL 780 GWLFQKTNTF CTSSSPDFST KRFKYLLTFS VERDWCALVK TLLDVLAERN SRSDALSQET 840 LEMLLEIHLL NRAVKRKCRK MVDLLIHYSV RHGNDNTNIY LFPPNLAGPS GVTPLHLAAS 900 TEDSEDMVDA LTSDPEEIGL NCWDSLRDDN GQSPFMYATL KNNHSYNSLV ARKLADRKNG 960 QVSISVGHEE VSFDKSWITG EADRPVSHPS QARPCALCSV AGAGRLRQAP HTRGLLERPY 1020 IHSMLAIAAV CVCVCLFLRG LPQIGSVAPF KWENVDFGPR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 5e-31 | 143 | 227 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010927297.1 | 0.0 | squamosa promoter-binding-like protein 15 isoform X2 | ||||
Swissprot | A2YX04 | 0.0 | SPL15_ORYSI; Squamosa promoter-binding-like protein 15 | ||||
Swissprot | Q6Z8M8 | 0.0 | SPL15_ORYSJ; Squamosa promoter-binding-like protein 15 | ||||
TrEMBL | A0A2H3ZU48 | 0.0 | A0A2H3ZU48_PHODC; squamosa promoter-binding-like protein 15 | ||||
STRING | XP_008799143.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G20980.1 | 0.0 | squamosa promoter binding protein-like 14 |