PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010927283.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | LBD | ||||||||
Protein Properties | Length: 168aa MW: 18968.2 Da PI: 7.4594 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124.6 | 4.8e-39 | 17 | 117 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaC++lrr+Ca dC+l+pyfpa++p++fa+vhk+FGasnv+++l++lp ++r +a++++ +eA +r++dPvyG+vg+i+ lq+++ ++ela XP_010927283.1 17 RCAACRYLRRRCAGDCILSPYFPASNPQRFACVHKIFGASNVTRMLQQLPVQQRAQAADAISMEAYWRVQDPVYGSVGIINLLQHEIYMNQHELA 111 6********************************************************************************************** PP DUF260 96 llkeel 101 ++++++ XP_010927283.1 112 RTQAQI 117 *99985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.321 | 16 | 117 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.4E-37 | 17 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016020 | Cellular Component | membrane |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MSSSNSNVSS NDSNPRRCAA CRYLRRRCAG DCILSPYFPA SNPQRFACVH KIFGASNVTR 60 MLQQLPVQQR AQAADAISME AYWRVQDPVY GSVGIINLLQ HEIYMNQHEL ARTQAQIAMY 120 TAQQQHQQQQ QEAPASQPVE ASNINPQQQD LLAPDRTFLD LSHFPDSF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-34 | 18 | 124 | 12 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-34 | 18 | 124 | 12 | 118 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010927283.2 | 1e-122 | LOW QUALITY PROTEIN: LOB domain-containing protein 24-like | ||||
Swissprot | P59468 | 3e-48 | LBD24_ARATH; LOB domain-containing protein 24 | ||||
TrEMBL | A0A2H3YNW1 | 4e-90 | A0A2H3YNW1_PHODC; LOB domain-containing protein 24-like isoform X1 | ||||
STRING | XP_008801576.1 | 2e-90 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5282 | 35 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 2e-36 | LOB domain-containing protein 24 |