PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010927253.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GATA
Protein Properties Length: 326aa    MW: 34808.8 Da    PI: 6.7206
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010927253.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA481.7e-15244281136
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkglk 36 
                     C++Cg ++  Tp++Rrgp g++tLCnaCGl+++ kg++
  XP_010927253.1 244 CHHCGISSraTPMMRRGPGGPRTLCNACGLMWANKGTM 281
                     ***********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009797.5E-12108143IPR010399Tify domain
PROSITE profilePS5132014.707108143IPR010399Tify domain
PfamPF062009.9E-13111142IPR010399Tify domain
PROSITE profilePS5101713.304169211IPR010402CCT domain
PfamPF062036.2E-16169211IPR010402CCT domain
SMARTSM004015.5E-11238291IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.866238294IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.7E-12242292No hitNo description
CDDcd002023.65E-15243286No hitNo description
Gene3DG3DSA:3.30.50.106.8E-15243285IPR013088Zinc finger, NHR/GATA-type
PfamPF003203.3E-13244281IPR000679Zinc finger, GATA-type
PROSITE patternPS003440244271IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MSENPSQPTD VKPLAGGLYA AHPAPAHPAV PLPGRIDEVP GSGGEGQLIV AADAQTIQRY  60
AVERDQDNGG GGDGMEEDHD GTMEGDGMEG DMPSDHANLG DPHGMVAPQV AGNQLTLSFQ  120
GEVYVFDSVS PEKVQAVLLL LGGREINTGL ASIPSSSNPY NKRSNFPQRV ASLMRFREKR  180
KERNFDKKIR YNVRKEVALR MQRNRGQFTS SKSKPEDVTA GITSLDATQR WGSVEGRPES  240
AATCHHCGIS SRATPMMRRG PGGPRTLCNA CGLMWANKGT MRDLSKNPPA ATQNALSEPK  300
ETNETSAVVG EQQPLPLTAN GHGSSS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010927253.10.0GATA transcription factor 20
SwissprotQ5Z4U51e-108GAT20_ORYSJ; GATA transcription factor 20
TrEMBLA0A2H3YIX20.0A0A2H3YIX2_PHODC; GATA transcription factor 20 isoform X1
STRINGXP_008799475.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43253868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.21e-78ZIM-LIKE 2