PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010927239.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
|
||||||||
Family | HB-PHD | ||||||||
Protein Properties | Length: 609aa MW: 68847.5 Da PI: 6.5068 | ||||||||
Description | HB-PHD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 34.9 | 2.6e-11 | 351 | 393 | 11 | 53 |
HHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 11 qleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 +e L ++F++n ps++ +e L+k+lg++ ++V+ WF+N R+ XP_010927239.1 351 AVEKLRQVFAENELPSRTVKENLSKQLGISSEKVSKWFKNARY 393 5789**************************************7 PP | |||||||
2 | PHD | 30.4 | 8.9e-11 | 77 | 130 | 1 | 51 |
SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSSTBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpegewlCeeCkek 51 +C+ C++ + +++++lCd +C+ fH+kCl+++le+ + ++ wlC+ C++k XP_010927239.1 77 FCAKCRSreAFPDNDIILCDgTCNCGFHQKCLEPPLENIPPGDQVWLCKFCECK 130 588888855455********56***************8888888*******985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57903 | 2.26E-13 | 68 | 132 | IPR011011 | Zinc finger, FYVE/PHD-type |
Gene3D | G3DSA:3.30.40.10 | 2.5E-12 | 73 | 131 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
PROSITE profile | PS50016 | 10.469 | 75 | 130 | IPR019787 | Zinc finger, PHD-finger |
PROSITE pattern | PS01359 | 0 | 75 | 127 | IPR019786 | Zinc finger, PHD-type, conserved site |
SMART | SM00249 | 7.9E-7 | 77 | 128 | IPR001965 | Zinc finger, PHD-type |
CDD | cd15504 | 1.29E-26 | 77 | 127 | No hit | No description |
Pfam | PF00628 | 2.8E-8 | 77 | 130 | IPR019787 | Zinc finger, PHD-finger |
Gene3D | G3DSA:1.10.10.60 | 6.2E-12 | 335 | 392 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 12.244 | 338 | 398 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.4E-8 | 340 | 402 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.02E-8 | 341 | 399 | No hit | No description |
SuperFamily | SSF46689 | 5.56E-10 | 341 | 402 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 8.9E-9 | 351 | 393 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 609 aa Download sequence Send to blast |
MKLEQNLIDA YSGDGWNGHS REKIKPENEL QRAKKQILKC KLGIRDAIHQ LDLLSSIGSI 60 EDSVMHPDGS VFHECIFCAK CRSREAFPDN DIILCDGTCN CGFHQKCLEP PLENIPPGDQ 120 VWLCKFCECK TEILEAVNAH LGTCFSANSR WEDIFKEATT DPDVENTYLN PAEDWPSEDS 180 EDEDYNPEKN VNSASRTGIA ENMTGDSSSS SSLFCSSDGA MSCSESIHTY SNGKSCDVEH 240 KEGNEANFVD SIINAEYGET NDCEIMSYQR QRRDVDYKKL HDDMFGKDLA DNEHQSEDED 300 WCPHRSTRRR IKSTTGTTLA KCVNEDGCAD IVLTEKISHE KKPLFRIPLN AVEKLRQVFA 360 ENELPSRTVK ENLSKQLGIS SEKVSKWFKN ARYAALKMRK AGITKSHHVN TITKRSRVSA 420 GKAGSFDEVA SVDNSILLPL SSIIHVGRNL RKILQKKNKK SMNIPLRMHL KTTANTDSTK 480 EFQNLGTSLT ANQCPSISIH RNLSKEVSTS LTNTMILKKE VSGLRRKFTL GRTFRAKRRN 540 VFQIDEMIDS EQLYVAEIER LCSLENRLRN LKNALLLCEY NDYESVKTHS TEENVTYVPV 600 AEVKEQAFI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010927238.1 | 0.0 | pathogenesis-related homeodomain protein isoform X1 | ||||
Refseq | XP_019707511.1 | 0.0 | pathogenesis-related homeodomain protein isoform X1 | ||||
TrEMBL | A0A2H3YFM0 | 0.0 | A0A2H3YFM0_PHODC; pathogenesis-related homeodomain protein-like isoform X1 | ||||
STRING | XP_008798084.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G29940.1 | 1e-116 | pathogenesis related homeodomain protein A |