PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010927183.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ARF
Protein Properties Length: 1129aa    MW: 125926 Da    PI: 6.9937
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010927183.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.42.3e-22128229199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae++       + +++  ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   +++
  XP_010927183.1 128 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QELQARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--RDE 218
                     99*****************************954.4444.49************************************************..568 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     +++l+++++r+
  XP_010927183.1 219 KQQLLLGIRRA 229
                     8889****997 PP
2Auxin_resp121.37.5e-40254337183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+v+YnPras+seFv++++k++ka++ +++s+GmRf+m fete+s +rr++Gt++g+sdldpvrW+nS+Wr+L+
  XP_010927183.1 254 AAHAAANNSPFTVFYNPRASPSEFVIPFAKYQKAVYnNQISLGMRFRMLFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQ 337
                     79********************************98799*******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.4E-43118257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.8E-41121243IPR015300DNA-binding pseudobarrel domain
CDDcd100171.40E-18127219No hitNo description
PfamPF023621.7E-20128229IPR003340B3 DNA binding domain
PROSITE profilePS5086311.716128230IPR003340B3 DNA binding domain
SMARTSM010193.7E-22128230IPR003340B3 DNA binding domain
PfamPF065075.9E-35254337IPR010525Auxin response factor
PfamPF023091.1E-99931081IPR033389AUX/IAA domain
PROSITE profilePS5174527.7029961081IPR000270PB1 domain
SuperFamilySSF542771.11E-710091074No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1129 aa     Download sequence    Send to blast
MKGSGNAAPA ANPCDGERKT INAELWYACA GPLVMLPPVG SLVVYFPQGH SEQVAASMQK  60
DIDAHIPNYP NLPSKLICLL HNVTLHADPE TDEVYAQMTL QPVNTYDKEA LQASELALKQ  120
TRPQTEFFCK TLTASDTSTH GGFSVPRRAA EKIFPPLDFS MQPPAQELQA RDLHDNVWTF  180
RHIYRGQPKR HLLTTGWSLF VSGKRLFAGD SVLFIRDEKQ QLLLGIRRAN RQPTNISSSV  240
LSSDSMHIGI LAAAAHAAAN NSPFTVFYNP RASPSEFVIP FAKYQKAVYN NQISLGMRFR  300
MLFETEESGT RRYMGTITGI SDLDPVRWKN SQWRNLQVGW DESAAGERRN RVSIWEIEPV  360
LAPFFICPPP FFRPKRPRQA GIPDDESSEM ENLFKRAMPW LNEEICRKDS QTQNTVMPGL  420
SLVQWMSMQQ NPSLANSNMQ TDYLRSLTAP AIQNAGATDL SRQLGMQAQF LQQNNIQFNS  480
ARLPQQNQQL DQFPKVSVPL NQLGIVTRSQ QQMQDVGVQQ RQQLINQSLP LNQTQTNIIQ  540
PQVLVQAQVQ QQQPVIQSHQ PLQTSMQQNQ PQHQQLFVQQ QQQHQQQLSH QQQHQQQQQQ  600
QQQFQQNRMP VQLPNHMNQQ LQLTDQQIQL QFLQKPQQQQ QTQSQPTMLH PELPQIQEQQ  660
KPLPEGPHQL ANSHSLPQQN MLSQQCAKTT SQAVRLSQPL PQQSQQKLQQ QQVVLSELNG  720
AVLPPTPRMN VLPTTGSSLL AAGGAQSGLT EDVPSCSTSP STNNGAVLPQ LILNRSHHPS  780
TITTDKTSQS AVTILSHNSF EAAAASPNIA KELPKPIYNV KATTPISKVQ TQGVVAPQTY  840
ISNTAQMDYL DTTSSGTSVC LSQTDGPLQQ SFPLSSLNQP SMFRDAPPDS DVQGTDPRNN  900
VLFGVNIDGP LGIPLTTDAL LANSINSGKY QNLISGNVIT NHSTSKDTQQ ELSSSMVSQS  960
FGVPDMAFNS IDSTINESSF LNRSSWAPAP PLQRMRTYTK VYKRGAVGRS IDITRYSGYD  1020
ELKHDLARMF SIEGQLEDRQ RIGWKLVYVD HEGDVLLVGD DPWEEFVNCV RYIKILSPQE  1080
VQQMRLDGDL GNNILPNQAC SSSDGGNAWR GQCDRNSGNP SAGSYDHLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1691635845388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010927183.10.0auxin response factor 19 isoform X1
SwissprotQ0D9R70.0ARFS_ORYSJ; Auxin response factor 19
TrEMBLA0A2H3YG650.0A0A2H3YG65_PHODC; Auxin response factor
STRINGXP_008798163.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang S, et al.
    The auxin response factor, OsARF19, controls rice leaf angles through positively regulating OsGH3-5 and OsBRI1.
    Plant Cell Environ., 2015. 38(4): p. 638-54
    [PMID:24995795]