PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010927135.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

G2-like

Protein Properties

Length: 369aa MW: 41419.1 Da PI: 5.8651

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010927135.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.3	1.5e-32	156	210	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LHerFveav++L G+ekAtPk +l+lm+v+gLt++hvkSHLQkYRl XP_010927135.1 156 KPRLRWTLDLHERFVEAVNKLDGAEKATPKGVLKLMNVEGLTIYHVKSHLQKYRL 210 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.067	153	213	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.1E-31	154	211	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.12E-17	154	210	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.5E-24	156	211	IPR006447	Myb domain, plants
Pfam	PF00249	7.0E-8	158	209	IPR001005	SANT/Myb domain
Pfam	PF14379	2.2E-21	247	293	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence Send to blast
MDDIFAIGRR RRDLPYPSPA EKCEPQNSAV QSLNSPLLHG GNTTNVHNED EHSDDLMKDF 60 LNLSGDASDS SFHGENYDNN SIALGEQMEL QMLSEQLGIA ITDNGEIPRL DDIYETPAPS 120 VPLSSNCNQT SQPLRPAAKF QLHSNSSTST TATANKPRLR WTLDLHERFV EAVNKLDGAE 180 KATPKGVLKL MNVEGLTIYH VKSHLQKYRL AKYLPEAKED KKASSSEDQK MPTVSHESDP 240 GKKRNIEVIE ALRMQIEVQK QLHEQLEVQR ALQLRIEEHA RYLQRILEEQ QKASNTFVFP 300 TQMPGTEMQL ESPHHLSPEQ AESKVDSICS PSSSNSKHKA TDSDTRSKPP EDHKRARLEV 360 EREGTSLGS

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence Send to blast

MDDIFAIGRR RRDLPYPSPA EKCEPQNSAV QSLNSPLLHG GNTTNVHNED EHSDDLMKDF  60
LNLSGDASDS SFHGENYDNN SIALGEQMEL QMLSEQLGIA ITDNGEIPRL DDIYETPAPS  120
VPLSSNCNQT SQPLRPAAKF QLHSNSSTST TATANKPRLR WTLDLHERFV EAVNKLDGAE  180
KATPKGVLKL MNVEGLTIYH VKSHLQKYRL AKYLPEAKED KKASSSEDQK MPTVSHESDP  240
GKKRNIEVIE ALRMQIEVQK QLHEQLEVQR ALQLRIEEHA RYLQRILEEQ QKASNTFVFP  300
TQMPGTEMQL ESPHHLSPEQ AESKVDSICS PSSSNSKHKA TDSDTRSKPP EDHKRARLEV  360
EREGTSLGS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	3e-24	156	213	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	3e-24	156	213	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	3e-24	156	213	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	3e-24	156	213	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	3e-24	156	213	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	3e-24	156	213	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	3e-24	156	213	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	3e-24	156	213	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in phosphate starvation signaling (PubMed:26082401). Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes (PubMed:26082401). Functionally redundant with PHR1 and PHR2 in regulating Pi starvation response and Pi homeostasis (PubMed:26082401). {ECO:0000269\|PubMed:26082401}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00354	DAP	Transfer from AT3G13040	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated under Pi starvation conditions. {ECO:0000269\|PubMed:26082401}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010927135.1	0.0	protein PHOSPHATE STARVATION RESPONSE 3 isoform X3
Swissprot	Q6YXZ4	1e-101	PHR3_ORYSJ; Protein PHOSPHATE STARVATION RESPONSE 3
TrEMBL	M0THW1	1e-148	M0THW1_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr7P15740_001	1e-148	(Musa acuminata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	2e-88	G2-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]