PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010927131.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

G2-like

Protein Properties

Length: 482aa MW: 53544.4 Da PI: 6.3585

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010927131.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.8	2.2e-32	269	323	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LHerFveav++L G+ekAtPk +l+lm+v+gLt++hvkSHLQkYRl XP_010927131.1 269 KPRLRWTLDLHERFVEAVNKLDGAEKATPKGVLKLMNVEGLTIYHVKSHLQKYRL 323 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.067	266	326	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	9.0E-31	267	324	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.09E-17	267	323	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.2E-24	269	324	IPR006447	Myb domain, plants
Pfam	PF00249	1.0E-7	271	322	IPR001005	SANT/Myb domain
Pfam	PF14379	3.2E-21	360	406	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 482 aa Download sequence Send to blast
MSSHSIITAE QSNSPEGMRH CCHASASSTT NLFNVLSDCQ KLLNDKLSCT SPSSYVQREL 60 INSSSPQKGL LFRLKKSSPE SDPGSPLSNV SHSQHFEHVF SSSSTFCASL YSSSSTSAES 120 YRQLCNLPFL PHPQKCEPQN SAVQSLNSPL LHGGNTTNVH NEDEHSDDLM KDFLNLSGDA 180 SDSSFHGENY DNNSIALGEQ MELQMLSEQL GIAITDNGEI PRLDDIYETP APSVPLSSNC 240 NQTSQPLRPA AKFQLHSNSS TSTTATANKP RLRWTLDLHE RFVEAVNKLD GAEKATPKGV 300 LKLMNVEGLT IYHVKSHLQK YRLAKYLPEA KEDKKASSSE DQKMPTVSHE SDPGKKRNIE 360 VIEALRMQIE VQKQLHEQLE VQRALQLRIE EHARYLQRIL EEQQKASNTF VFPTQMPGTE 420 MQLESPHHLS PEQAESKVDS ICSPSSSNSK HKATDSDTRS KPPEDHKRAR LEVEREGTSL 480 GS

Sequence ? help Back to Top

Protein Sequence Length: 482 aa Download sequence Send to blast

MSSHSIITAE QSNSPEGMRH CCHASASSTT NLFNVLSDCQ KLLNDKLSCT SPSSYVQREL  60
INSSSPQKGL LFRLKKSSPE SDPGSPLSNV SHSQHFEHVF SSSSTFCASL YSSSSTSAES  120
YRQLCNLPFL PHPQKCEPQN SAVQSLNSPL LHGGNTTNVH NEDEHSDDLM KDFLNLSGDA  180
SDSSFHGENY DNNSIALGEQ MELQMLSEQL GIAITDNGEI PRLDDIYETP APSVPLSSNC  240
NQTSQPLRPA AKFQLHSNSS TSTTATANKP RLRWTLDLHE RFVEAVNKLD GAEKATPKGV  300
LKLMNVEGLT IYHVKSHLQK YRLAKYLPEA KEDKKASSSE DQKMPTVSHE SDPGKKRNIE  360
VIEALRMQIE VQKQLHEQLE VQRALQLRIE EHARYLQRIL EEQQKASNTF VFPTQMPGTE  420
MQLESPHHLS PEQAESKVDS ICSPSSSNSK HKATDSDTRS KPPEDHKRAR LEVEREGTSL  480
GS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-24	269	326	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-24	269	326	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-24	269	326	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-24	269	326	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-24	269	326	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-24	269	326	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-24	269	326	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-24	269	326	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in phosphate starvation signaling (PubMed:26082401). Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes (PubMed:26082401). Functionally redundant with PHR1 and PHR2 in regulating Pi starvation response and Pi homeostasis (PubMed:26082401). {ECO:0000269\|PubMed:26082401}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00354	DAP	Transfer from AT3G13040	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated under Pi starvation conditions. {ECO:0000269\|PubMed:26082401}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010927131.1	0.0	protein PHOSPHATE STARVATION RESPONSE 3 isoform X1
Refseq	XP_010927132.1	0.0	protein PHOSPHATE STARVATION RESPONSE 3 isoform X1
Refseq	XP_010927133.1	0.0	protein PHOSPHATE STARVATION RESPONSE 3 isoform X1
Refseq	XP_019707510.1	0.0	protein PHOSPHATE STARVATION RESPONSE 3 isoform X1
Swissprot	Q6YXZ4	1e-121	PHR3_ORYSJ; Protein PHOSPHATE STARVATION RESPONSE 3
TrEMBL	A0A3Q0I617	1e-179	A0A3Q0I617_PHODC; protein PHOSPHATE STARVATION RESPONSE 3
STRING	XP_008796959.1	1e-179	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4526	37	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	8e-91	G2-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]