PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010927126.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C3H
Protein Properties Length: 390aa    MW: 41986.5 Da    PI: 8.6498
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010927126.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.11.1e-11527326
                    S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                     e+Cr+f+r G C+yGdrCkF H+
  XP_010927126.1  5 KEPCRNFQR-GSCQYGDRCKFLHV 27
                    69*******.*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010317.535229IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.11E-5329IPR000571Zinc finger, CCCH-type
SMARTSM003569.0E-8328IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-8526IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-9527IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005635Cellular Componentnuclear envelope
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MNRRKEPCRN FQRGSCQYGD RCKFLHVAPQ QSKPSTFGFG AQSALHLAQN TQQQKPNPFG  60
FGVSGNSQLK GASNFGARNQ SSSRPFENKW TRSSSIASTT STSPQQNDSL PQAAIHKCTD  120
PELCKRQIVE DFKNEAPLWK LTCYGHCKNG PCDIIGDISF EELRAAAYED ARRGLSLQSI  180
VERERNLLNS KLIEFDNLLR NPYVLRNPNS SGTSLFAVTN SNASLIGAQT NAPPSFSSFS  240
QLGVATNVGS TIRTSVPGTP PSAVFNQPSS FQSNGQTSGG FAMKFGTSGI GSQLPTQPSG  300
SSLGPNSSNF NNSVRAAGSQ HFSFPAVSPQ FSGTSNASPN ILDGPQVAPT TAHQASVMEK  360
QNVSPDDSIW LKEEWAIGEI PVEAPPERFC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010927126.10.0zinc finger CCCH domain-containing protein 46
TrEMBLA0A2H3YCV00.0A0A2H3YCV0_PHODC; zinc finger CCCH domain-containing protein 46
STRINGXP_008796918.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94472829
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.28e-71C3H family protein