PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010927053.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 237aa MW: 26850.6 Da PI: 10.1909 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.7 | 8.3e-18 | 84 | 138 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++t+eq Le+ F+ +++++ +++ +LA++l+L rqV vWFqNrRa+ k XP_010927053.1 84 RKKLRLTNEQSMLLEDSFRTHNTLTSSRKNHLAQRLNLRPRQVEVWFQNRRARTK 138 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 107.3 | 1.2e-34 | 84 | 174 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl++eq+ lLE+sF+++++L+++rK++la++L+l+prqv+vWFqnrRARtk+kq+E++ e L +++++l++en++L++e e+r+ l XP_010927053.1 84 RKKLRLTNEQSMLLEDSFRTHNTLTSSRKNHLAQRLNLRPRQVEVWFQNRRARTKLKQTEMERELLNKSCESLMNENRKLKRELMEVRSWL 174 69**********************************************************************************9998766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.7E-19 | 73 | 141 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.4E-18 | 76 | 138 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.281 | 80 | 140 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.0E-16 | 82 | 144 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.46E-14 | 84 | 141 | No hit | No description |
Pfam | PF00046 | 6.0E-15 | 84 | 138 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 115 | 138 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 2.1E-10 | 140 | 184 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MVEEEYCNTV LGLSIGGGGH FPSNRSHDRK PPVQFHILFP PQLKEEEIKE ETSTIGEDKK 60 KLSRLNSDNE EDCIIGGSNR GGTRKKLRLT NEQSMLLEDS FRTHNTLTSS RKNHLAQRLN 120 LRPRQVEVWF QNRRARTKLK QTEMERELLN KSCESLMNEN RKLKRELMEV RSWLKPGSPF 180 YVQLSKAATL SMCPSCKKMA SQAIGVNPLS VFPNKTNQGC TGAASKTTLE RSTGSSL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 82 | 88 | TRKKLRL |
2 | 132 | 140 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010927053.1 | 1e-176 | homeobox-leucine zipper protein HOX18 | ||||
Swissprot | P46665 | 3e-44 | HAT14_ARATH; Homeobox-leucine zipper protein HAT14 | ||||
TrEMBL | A0A1L5YJM4 | 1e-174 | A0A1L5YJM4_ELAGV; HD-Zip II protein HOX1 | ||||
STRING | XP_008801538.1 | 1e-99 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8130 | 34 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 2e-46 | homeobox from Arabidopsis thaliana |