PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010927035.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | NAC | ||||||||
Protein Properties | Length: 175aa MW: 20684.3 Da PI: 7.6031 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 140.7 | 8.6e-44 | 32 | 160 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka..eek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 ppG+rF Ptdeelv++yL++kv+++kl+ + + e d+y+++P++L +k++a ee+ +wy F++r +kya+g r+nr++ gyWkat +d+++l XP_010927035.1 32 PPGVRFTPTDEELVKYYLTPKVRRQKLPY-DSFVEDDLYQYHPQELAEKYNAsmEEEgNWYIFTQRIRKYANGGRPNRSAGLGYWKATSSDQKIL 125 9****************************.778899**********8544432233359************************************ PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++g+++g kk+Lv+++g++p gekt Wvm+ey++ XP_010927035.1 126 DREGKKIGYKKSLVYHEGKQPYGEKTGWVMQEYKI 160 *********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.48E-46 | 27 | 165 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 44.641 | 31 | 175 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.4E-24 | 32 | 160 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MELLAPDQIS EEETKMEAEW QSYSRYWPPP YPPGVRFTPT DEELVKYYLT PKVRRQKLPY 60 DSFVEDDLYQ YHPQELAEKY NASMEEEGNW YIFTQRIRKY ANGGRPNRSA GLGYWKATSS 120 DQKILDREGK KIGYKKSLVY HEGKQPYGEK TGWVMQEYKI DESQKPIKAK SMVVS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 6e-38 | 32 | 160 | 16 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010927035.1 | 1e-126 | NAC transcription factor 32-like | ||||
Swissprot | Q52QH4 | 3e-37 | NAC68_ORYSJ; NAC domain-containing protein 68 | ||||
TrEMBL | A0A2H3X6X7 | 2e-51 | A0A2H3X6X7_PHODC; NAC transcription factor 29-like | ||||
STRING | XP_008779229.1 | 3e-52 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13130 | 21 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77450.1 | 3e-38 | NAC domain containing protein 32 |