PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010926981.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

SRS

Protein Properties

Length: 330aa MW: 34020.8 Da PI: 7.7544

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010926981.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	220.5	3.4e-68	103	263	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstklssaesk 97 g+++CqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpaa+rrerq ++++a+ aa s+ +++a+k++r +s++++++s+t+ +s++++ XP_010926981.1 103 GASTCQDCGNQAKKDCSHRRCRTCCKSRGFECSTHVKSTWVPAARRRERQLAASTAAVGAAGSSaSTSAPKKPRLISSQTTTTASHTS-NSNTPP 196 6789*******************************************988877777666555377788888877555555555555.555677 PP DUF702 98 keletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++l+tss lP +v+++avf+cvrv+s+ddge+e+aYq+ v+igGhvfkG+LydqG+++ XP_010926981.1 197 RSLDTSSshqdasfrenLPGHVRAPAVFKCVRVTSIDDGEDEYAYQAMVKIGGHVFKGFLYDQGVDD 263 8888888899****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.1E-63	104	262	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	7.5E-27	106	148	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	2.3E-29	214	261	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0048364	Biological Process	root development
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MGMVGLRDVL VVAPAGSFHP QYHEPLPSSA EHPIIPLLTA APCLVDEAHD GRPKPAGGIH 60 LWQAQPPPPP QNPSPNPTLS YLKKPVPTLD AAGILAGAGG GGGASTCQDC GNQAKKDCSH 120 RRCRTCCKSR GFECSTHVKS TWVPAARRRE RQLAASTAAV GAAGSSASTS APKKPRLISS 180 QTTTTASHTS NSNTPPRSLD TSSSHQDASF RENLPGHVRA PAVFKCVRVT SIDDGEDEYA 240 YQAMVKIGGH VFKGFLYDQG VDDGRGEASI SNDAIPNISE LHLGGAGAAA CGGRNGSSSS 300 AIIPSDEYGD GTPGGGGFLG GTTNYGHPIN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010926981.1	0.0	protein LATERAL ROOT PRIMORDIUM 1
Swissprot	Q94CK9	5e-74	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A2H3YSY9	1e-170	A0A2H3YSY9_PHODC; LOW QUALITY PROTEIN: protein LATERAL ROOT PRIMORDIUM 1-like
STRING	XP_008803345.1	1e-171	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3579	36	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	2e-65	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]